New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2617939 =	NA (NA)	14 (0.120)	6/164	NT	NA	intergenic (+2/+136)	yfgD/hda	putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation
	?	NC_000913	2617967 =	NA (NA)					intergenic (+30/+108)	yfgD/hda	putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation

CGCCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2618043‑2617939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacatTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAA  >  NC_000913/2617967‑2618065                                                                                                                                                                                                              CGCCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAG                                                                                                          <  1:1439856/100‑1  GCCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGC                                                                                                         >  1:118984/1‑100   tCTTATCCGACCTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGCTAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCA                                                                                                        >  1:2024751/2‑100   CCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGGCGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCA                                                                                                        <  2:2443920/100‑1   CCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCA                                                                                                        <  2:2886087/100‑1    CTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCAC                                                                                                       >  2:329638/1‑100    CTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCAC                                                                                                       >  1:3037902/1‑100     TTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACA                                                                                                      <  1:680174/100‑1     TTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCAC                                                                                                       <  2:1501762/99‑1      TATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACAT                                                                                                     >  2:1676135/1‑100                                                                         CGGCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTC                                  >  2:648669/1‑100                                                                         CGGCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTC                                  >  1:1460237/1‑100                                                                         CGGCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTC                                  >  1:871300/1‑100                                                                          GGCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGGTGCGACGCTTGCCACGTCTTATCCGCCCTACGAATTATATGGATTCACTTCGCGTAGATC                                  >  1:826580/1‑99                                                                           GCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGG                                >  1:1206183/1‑100                                                                           GCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGG                                >  2:1667864/1‑100                                                                           GCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGG                                >  1:1647576/1‑100                                                                           GCAATGTGCTGCAACTAGCGATGGAGCACATTGCCGGATGCTACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTCACTTCGCGTCGTTCG                                 >  1:2386328/1‑99                                                                            CAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGGCGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCTTAGTT                                   >  1:2038201/1‑96                                                                            CAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGAGGGTTGGCACGTCTTATAGGGCCTACGAATAGTAGGGATTAACTTCGCGTAGTT                                   >  2:1063298/1‑96                                                                            CAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGA                               >  2:1942620/1‑100                                                                             AATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGAT                              >  1:1429646/1‑100                                                                             AATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGAT                              >  1:2192885/1‑100                                                                                GTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAG                           >  1:1913140/1‑100                                                                                                    GCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCTCATCCGAC       <  2:680176/100‑1                                                                                                    GCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGAC       <  1:2119960/100‑1                                                                                                    GCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGAC       <  1:1978262/100‑1                                                                                                      ACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAA     <  2:1799461/100‑1                                                                                                      ACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAA     >  1:3286356/1‑100                                                                                                      ACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAA     <  2:2695968/100‑1                                                                                                       CATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAAT    <  2:1860600/100‑1                                                                                                       CATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAAT    <  2:1610700/100‑1                                                                                                       CATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAAT    >  1:2199734/1‑100                                                                                                        ATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATA   <  2:2766531/100‑1                                                                                                        ATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATA   >  2:3367877/1‑100                                                                                                         TTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAA  <  2:1923320/100‑1                                                                                                         TTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAA  >  1:2506993/1‑100                                                                                                                                                                                                              CGCCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2618043‑2617939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacatTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAATAA  >  NC_000913/2617967‑2618065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.