New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3622466 =	NA (NA)	20 (0.170)	9/170	NT	55.2%	coding (3275/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	3622497 =	17 (0.140)					coding (3306/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTG  >  NC_000913/3622368‑3622563                                                                                                   |                                                                                                  cGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccg                                                                                                  >  2:314352/1‑100 (MQ=40) cGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccg                                                                                                  >  1:2310400/1‑100 (MQ=38)  gAAGCTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccgc                                                                                                 >  1:1416369/1‑100 (MQ=38)  gAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccgc                                                                                                 >  2:1807348/1‑100 (MQ=38)  gAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccgc                                                                                                 >  1:1573733/1‑100 (MQ=38)  gAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccgc                                                                                                 <  1:2478693/100‑1 (MQ=38)    aaCTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccgccg                                                                                               >  1:2544097/1‑100 (MQ=38)     aCTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCgg                                                                                              <  2:88634/100‑1 (MQ=38)      cTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGt                                                                                             <  2:1023163/100‑1 (MQ=35)      cTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGt                                                                                             >  2:1092191/1‑100 (MQ=35)      cTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGt                                                                                             <  2:337864/100‑1 (MQ=35)           aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTgg                                                                                        <  2:1477642/100‑1 (MQ=33)           aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTgg                                                                                        <  2:2280734/100‑1 (MQ=33)           aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTgg                                                                                        <  1:1057641/100‑1 (MQ=32)            ccGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGt                                                                                       <  1:2681418/100‑1 (MQ=33)            ccGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCGGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGt                                                                                       <  1:1587212/100‑1 (MQ=17)               gTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCa                                                                                    >  1:1904605/1‑100 (MQ=33)               gTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCa                                                                                    <  1:1884886/100‑1 (MQ=32)               gTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCa                                                                                    <  2:2071082/100‑1 (MQ=33)               gTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCa                                                                                    <  2:3332468/100‑1 (MQ=33)                tGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAg                                                                                   <  2:706296/100‑1 (MQ=33)                 gAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGa                                                                                  <  1:2047690/100‑1 (MQ=32)                 gAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGa                                                                                  <  2:2231631/100‑1 (MQ=33)                 gAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGa                                                                                  <  2:473145/100‑1 (MQ=32)                  aGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGAt                                                                                 <  2:588371/100‑1 (MQ=33)                    cTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAACAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGc                                                                               >  1:1866026/1‑100 (MQ=18)                     tGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCt                                                                              <  1:1343398/100‑1 (MQ=32)                     tGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCt                                                                              <  2:1652987/100‑1 (MQ=33)                      ggCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTc                                                                             >  1:2979130/1‑100 (MQ=33)                      ggCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTc                                                                             >  1:1267761/1‑100 (MQ=33)                       gCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCg                                                                            <  2:446023/100‑1 (MQ=33)                       gCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCg                                                                            <  2:979585/100‑1 (MQ=32)                        cGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGa                                                                           >  1:1346324/1‑100 (MQ=33)                        cGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGa                                                                           <  1:2880333/100‑1 (MQ=32)                        cGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGGGTTCCCGCCGGTGCTGGTGCAGATGCTCGa                                                                           >  2:1182030/1‑100 (MQ=18)                        cGAAAACGCAGCGCCGCAGCATGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGa                                                                           >  1:999309/1‑100 (MQ=17)                         gAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGa                                                                           >  1:276068/1‑99 (MQ=32)                         gAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGAc                                                                          <  2:1994945/100‑1 (MQ=33)                         gAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGAc                                                                          <  2:1836698/100‑1 (MQ=33)                              cGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCt                                                                     >  1:309682/1‑100 (MQ=33)                               gCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTG                                                                    <  2:1034779‑M1/100‑1 (MQ=255)                               gCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTG                                                                    <  2:3390424‑M1/100‑1 (MQ=255)                                cAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGG                                                                   >  2:1737988‑M1/1‑100 (MQ=255)                                 aGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA                                                                  <  2:1101036‑M1/100‑1 (MQ=255)                                  gcgcCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAA                                                                 <  2:1427069‑M1/100‑1 (MQ=255)                                    gccgcAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAg                                                               >  2:893173/1‑100 (MQ=33)                                       gcAGCCTGGGGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGa                                                            <  1:1386800/100‑1 (MQ=18)                                        cAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGaa                                                           <  2:3072356/100‑1 (MQ=32)                                         aGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGaaa                                                          <  2:1385083/100‑1 (MQ=33)                                          gCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAt                                                         >  1:349168/1‑100 (MQ=33)                                          gCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCCGGAAAGTGAAAt                                                         <  2:2242414/100‑1 (MQ=18)                                            cTGGTGCATGCCCTTCAGCAGTCCTGCCGCGAAGACGGTGGCAGTGTGCTGTTCCCTCCGTTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGaaa                                                          <  1:3199722/97‑1 (MQ=11)                                            cTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATcc                                                       >  2:1914424/1‑100 (MQ=33)                                            cTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATcc                                                       >  2:1094716/1‑100 (MQ=33)                                            cTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATcc                                                       >  2:2522214/1‑100 (MQ=33)                                            cTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTCGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATc                                                        >  1:3265842/1‑99 (MQ=17)                                              ggCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTg                                                     <  1:925077/100‑1 (MQ=32)                                              ggCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTg                                                     <  1:718505/100‑1 (MQ=33)                                               gCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTgg                                                    <  1:2828383/100‑1 (MQ=32)                                               gCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTgg                                                    <  1:2710865/100‑1 (MQ=33)                                                cGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGc                                                   <  2:3354440/100‑1 (MQ=33)                                                cGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGc                                                   <  1:814238/100‑1 (MQ=32)                                                                                          tggtgTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAcaccacactgccaccgtcttcgccgccggactgctgaagcgcatccgccaggctgc         >  1:1654664‑M1/1‑44 (MQ=255)                                                                                              gtTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAcaccacactgccaccgtcttcgccgccggactgctgaagcgcatccgccaggctgcggcg     >  1:635489‑M1/1‑40 (MQ=255)                                                                                              gtTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAcaccacactgccaccgtcttcgccaccggactgctgaagggtatccgccaggctgcggcg     >  2:2383342‑M1/1‑40 (MQ=255)                                                                                                 cccGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAcaccacactgccaccgtcttcgccgccggactgctgaagcgcatccgccaggctgcggcgctg  >  2:3072178‑M1/1‑37 (MQ=255)                                                                                                 cccGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAcaccacactgccaccgtcttcgccaccggactgctgaagggtatccgccaggctgcggcgctg  >  1:2225603‑M1/1‑37 (MQ=255)                                                                                                   |                                                                                                  CGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTG  >  NC_000913/3622368‑3622563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.