New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2118622NA (NA)8 (0.070) 7/168 NT NA noncoding (157/186 nt) REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 2118649 NA (NA)noncoding (184/186 nt) REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 175 total aligned reads displayed.

AGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGAC  >  NC_000913/2118523‑2118720
                                                                                                   |                                                                                                  
 ggACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAc                                                                                                   >  2:1335211‑M1/1‑99 (MQ=255)
  gACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcg                                                                                                  >  2:2561725‑M1/1‑98 (MQ=255)
   aCGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcgg                                                                                                 <  2:410319‑M1/100‑4 (MQ=255)
   aCGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcgg                                                                                                 <  2:600100‑M1/100‑4 (MQ=255)
    cGGATAAGGCGTTGACGCCGCGTCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcgga                                                                                                <  1:28990‑M1/100‑5 (MQ=255)
      gATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATa                                                                                              <  1:932328/100‑1 (MQ=255)
       aTAAGGCGTTCACGCCGCGTCTGCCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATaa                                                                                             <  1:213251/100‑1 (MQ=255)
       aTAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATaa                                                                                             >  1:1861453/1‑100 (MQ=255)
       aTAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATaa                                                                                             >  2:1266937/1‑100 (MQ=255)
        tAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAAGCCTACAGGTCCCGAGCACAGAACCGTAGGAcggat                                                                                               >  2:1520042‑M1/1‑92 (MQ=255)
         aaGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAgg                                                                                           >  1:1157938/1‑100 (MQ=255)
          aGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGc                                                                                          <  1:799398/100‑1 (MQ=255)
           ggCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCg                                                                                         >  2:79368/1‑100 (MQ=255)
           ggCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCg                                                                                         >  1:3334600/1‑100 (MQ=255)
            gCGTTCACGCCGCCTCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGt                                                                                        <  1:2676486/100‑1 (MQ=255)
             cGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGtt                                                                                       >  1:2842822/1‑100 (MQ=255)
              gTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGttt                                                                                      >  2:3063627/1‑100 (MQ=255)
               ttCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGtttt                                                                                     <  1:2917920/100‑1 (MQ=255)
                tCACACCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTa                                                                                    <  2:1696758/100‑1 (MQ=255)
                 cACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAc                                                                                   >  1:1780387/1‑100 (MQ=255)
                   cgccgcATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAcgc                                                                                 >  1:358116/1‑100 (MQ=255)
                    gccgcATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAcgcc                                                                                <  2:239113/100‑1 (MQ=255)
                    gccgcATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAcgcc                                                                                <  1:3017018/100‑1 (MQ=255)
                     ccgcATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAcgccg                                                                               <  2:1802421/100‑1 (MQ=255)
                       gCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCA                                                                             >  1:987804‑M2/1‑100 (MQ=255)
                       gCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCA                                                                             >  2:1780395‑M2/1‑100 (MQ=255)
                         aTCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcggatgcggcgtaaaacgccttatc                                                                           <  2:844204‑M1/100‑26 (MQ=255)
                         aTCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATC                                                                           <  1:2388370‑M2/100‑1 (MQ=255)
                          tCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGTCCTACAGGTCCCGAGCACAGAACCGTAGGAcggatgcggcgtaaaacgccttatcc                                                                          <  1:1467253‑M1/100‑27 (MQ=255)
                           ccGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcggataaggcgtaaaacgccttatccg                                                                         <  1:2984702‑M1/100‑28 (MQ=255)
                            cGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTGCCGAGCAGAGAAGCGCAGGACGGATAAGGCGTTTTACGCCGCATCCgg                                                                        <  1:2291762/100‑1 (MQ=18)
                             ggCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcggatgcggcgtaaaacgccttatccgtc                                                                       <  1:1496694‑M1/100‑30 (MQ=255)
                             ggCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGc                                                                       >  1:1555734/1‑100 (MQ=255)
                              gCACTCATTGCCTTTTGCGACGTTGTCTCGTCTTATCAGTCCTACAGTGCCCGAGCACAGAACCGTATGACGCATAAGGCGTTTTAcgccg                                                                               <  1:3227206/91‑1 (MQ=9)
                                 ttCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAAcc                                                                   >  2:299952/1‑100 (MQ=255)
                                 ttCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAAcc                                                                   <  2:205344/100‑1 (MQ=255)
                                 ttCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAAcc                                                                   >  1:2282972/1‑100 (MQ=255)
                                  tCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCg                                                                  >  2:643903/1‑100 (MQ=255)
                                     gTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcggatgcggcgtaaaacgccttatccgtcctacggt                                                                <  1:3193530‑M1/99‑37 (MQ=255)
                                        catgttGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCg                                                            <  1:2199843/95‑1 (MQ=255)
                                         cTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCgg                                                           <  1:1283191/100‑1 (MQ=255)
                                          tGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGa                                                          >  1:43879/1‑100 (MQ=255)
                                             tGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAAcc                                                       <  2:2716680/100‑1 (MQ=255)
                                             tGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAAcc                                                       <  2:1865036/100‑1 (MQ=255)
                                             tGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAAcc                                                       <  2:1165369/100‑1 (MQ=255)
                                               cGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCGGGCAACCGTTGTCGGAACCGa                                                     >  2:1761245/1‑100 (MQ=255)
                                                gACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGaa                                                    <  1:1006091/100‑1 (MQ=255)
                                                    cTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAAc                                                 >  1:431532/1‑99 (MQ=255)
                                                    cTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACa                                                <  2:2220829/100‑1 (MQ=255)
                                                     tGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAg                                               >  2:3013781/1‑100 (MQ=255)
                                                     tGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAg                                               >  2:972839/1‑100 (MQ=255)
                                                      gACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGc                                              >  1:3002882/1‑100 (MQ=255)
                                                        cgcgTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCaa                                            >  2:1598601/1‑100 (MQ=255)
                                                         gcgTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAAc                                           <  2:1363011/100‑1 (MQ=255)
                                                           gTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTc                                         >  2:1518451/1‑100 (MQ=255)
                                                               tATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCAccc                                     <  2:768498/100‑1 (MQ=255)
                                                               tATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCAccc                                     >  1:768496/1‑100 (MQ=255)
                                                               tATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAAACGAAAACAGCAACTCAccc                                     >  2:2533722/1‑100 (MQ=255)
                                                                  cAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACcccgc                                  >  1:3357114/1‑100 (MQ=255)
                                                                   aGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTCTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACcccgcc                                 >  1:2497520/1‑100 (MQ=255)
                                                                    ggCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGGAACCGTTGTCGGAACCGAAAACAGCAACTCACcccgccc                                >  2:3317791/1‑100 (MQ=255)
                                                                    ggCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACcccgccc                                >  1:1281615/1‑100 (MQ=255)
                                                                      ccTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGt                              >  2:356075/1‑100 (MQ=255)
                                                                       cTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTa                             <  2:3403218/100‑1 (MQ=255)
                                                                       cTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTa                             <  1:2741279/100‑1 (MQ=255)
                                                                        tACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTaa                            >  2:2694253/1‑100 (MQ=255)
                                                                           aGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAg                         <  2:1728977/100‑1 (MQ=255)
                                                                            ggTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTaagatc                        >  2:908003/1‑96 (MQ=255)
                                                                            ggTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGc                        <  2:1555741/100‑1 (MQ=255)
                                                                             gTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGca                       >  2:3185364/1‑100 (MQ=255)
                                                                                ccGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattt                    >  2:1936017/1‑100 (MQ=255)
                                                                                 cGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcatttt                   <  2:336165/100‑1 (MQ=255)
                                                                                 cGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcatttt                   >  2:1944487/1‑100 (MQ=255)
                                                                                  gAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttc                  <  2:1622259/100‑1 (MQ=255)
                                                                                   aGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttca                 <  1:3189006/100‑1 (MQ=255)
                                                                                     cacaGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcatt               <  1:745318/100‑1 (MQ=255)
                                                                                       caGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcatttt             >  2:1264674/1‑100 (MQ=255)
                                                                                         gAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCAtttttt           >  1:369367/1‑100 (MQ=255)
                                                                                          aaCCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTc          <  1:901847/100‑1 (MQ=255)
                                                                                          aaCCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTc          <  1:2948073/100‑1 (MQ=255)
                                                                                          aaCCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTc          <  1:15881/100‑1 (MQ=255)
                                                                                          aaCCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTc          <  1:612272/100‑1 (MQ=255)
                                                                                           aCCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCg         <  1:1771903/100‑1 (MQ=255)
                                                                                            ccGTAGGACGGATAAGGCGTTTTACGCCGCATCCGtcctacggttctgtgctcgggacctgtaagcctgataagacgcgtcagcgtcacatcaggcactg        <  1:835550‑M2/100‑66 (MQ=255)
                                                                                            ccGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGc        <  1:2587793/100‑1 (MQ=255)
                                                                                            ccGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGc        <  1:308049/100‑1 (MQ=255)
                                                                                            ccGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGc        >  2:3224794/1‑100 (MQ=255)
                                                                                            ccGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGc        >  1:3205893/1‑100 (MQ=255)
                                                                                             cGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCt       <  1:1042257/100‑1 (MQ=255)
                                                                                              gTAGGACGGATAAGGCGTTTTACGCCGCATCCGtcctacggttctgtgctcgggacctgtaggcctgataagacgcgtcagcgtcgcatcaggcactga       <  1:3028103‑M2/99‑67 (MQ=255)
                                                                                              gTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTg      >  2:321064/1‑100 (MQ=255)
                                                                                              gTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTg      <  2:2440919/100‑1 (MQ=255)
                                                                                               tAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACATCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCtac     <  2:2310163/100‑3 (MQ=255)
                                                                                                aGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCg    <  2:1895414/100‑1 (MQ=255)
                                                                                                aGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCg    <  2:47288/100‑1 (MQ=255)
                                                                                                aGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCg    <  1:1704099/100‑1 (MQ=255)
                                                                                                aGGACGGATAAGGCGTTTTACGCCACATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCg    <  2:2558074/100‑1 (MQ=255)
                                                                                                 ggACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGa   >  2:529767/1‑100 (MQ=255)
                                                                                                 ggACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGa   >  1:964865/1‑100 (MQ=255)
                                                                                                  gACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGAc  <  1:1114522/100‑1 (MQ=255)
                                                                                                   |                                                                                                  
AGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGAC  >  NC_000913/2118523‑2118720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.