New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3619655 =	NA (NA)	8 (0.070)	5/168	NT	100%	coding (464/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	3619677 =	0 (0.000)					coding (486/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

TGAGGACGGTTACAGCCGCAGCGAGTCACTGTGGCTGGTGCGCGGCGGCGTGGCGAAACTGGATGAAGGTCACCGGCTGGCCGCACTCTGGCAGGCGCTGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGTTGGTGTGAGCGGGTGCCGGAAGCG  >  NC_000913/3619578‑3619776                                                                                                    |                                                                                                    aaccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcggcgcctgccagagtgcggccag                                                                                                     >  1:79190‑M2/100‑100 (MQ=255)   ccgagcagccaccacggcccctgcggactgtttgtcgccagctaacgatgccgacttcagcggcgctcttccggcagcgcctgccagagtgcggccaGcc                                                                                                   >  1:574094‑M2/98‑100 (MQ=255)   ccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGcc                                                                                                   >  2:540608‑M2/98‑100 (MQ=255)   ccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGcc                                                                                                   <  2:2804878‑M2/3‑1 (MQ=255)   ccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGcc                                                                                                   >  1:1560025‑M2/98‑100 (MQ=255)   ccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGcc                                                                                                   >  1:2475566‑M2/98‑100 (MQ=255)   ccgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGcc                                                                                                   >  2:2270082‑M2/98‑100 (MQ=255)    cgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCg                                                                                                  >  2:775787‑M2/97‑100 (MQ=255)    cgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCg                                                                                                  <  1:3268209‑M2/4‑1 (MQ=255)    cgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCg                                                                                                  <  1:1245184‑M2/4‑1 (MQ=255)    cgagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCg                                                                                                  >  1:2781841‑M2/97‑100 (MQ=255)     gagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCgg                                                                                                 <  2:2381107‑M2/5‑1 (MQ=255)     gagcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGCCgg                                                                                                 >  2:1661224‑M2/96‑100 (MQ=255)      agcagccaccacggcccctgcggactgtttgtcgccagataacgatgcggacttaagcggagttcttccggcagcgcctgccagagtgcggccaGccgtt                                                                                                <  2:2312413‑M2/6‑3 (MQ=255)                                                                      cttccggcagcgcctgccagagtgcggccaGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGgctg                                >  1:2591497‑M2/31‑100 (MQ=255)                                                                      cttccggcagcgcctgccagagtgcggccaGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGgctg                                >  2:1617245‑M2/31‑100 (MQ=255)                                                                       ttccggcagcgcctgccagagtgcggccaGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGgctgc                               >  1:108343‑M2/30‑100 (MQ=255)                                                                        tccggcagcgcctgccagagtgcggccaGCTGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGTCAAACAGTCCGCAGGGGCCGTGGTGgctgc                               >  1:484997‑M2/29‑99 (MQ=255)                                                                        tccggcagcgcctgccagagtgcggccaGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGgctgct                              >  2:2512594‑M2/29‑100 (MQ=255)                                                                        tccggcagcgcctgccagagtgcggccaGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGgctgct                              >  1:3019429‑M2/29‑100 (MQ=255)                                                                         ccggcagcgcctgccagagtgcggccaGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTc                             >  2:2324366‑M2/28‑100 (MQ=255)                                                                          cggcagcgcctgccagagtgcggccaGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCg                            >  2:2386055‑M2/27‑100 (MQ=255)                                                                                                    GCCGTAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGTTGGTGTGAGCGGGTGCCGGAAgcn  <  1:2860326‑M2/100‑2 (MQ=255)                                                                                                    GCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGTTGGTGTGAGCGGGTGCCGGAAGCg  <  2:149783‑M2/100‑1 (MQ=255)                                                                                                    GCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGTTGGTGTGAGCGGGTGCCGGAAGCg  >  2:2471451‑M2/1‑100 (MQ=255)                                                                                                    GCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGTTGGTGTGAGCGGGTGCCGGAAGCg  <  1:1436721‑M2/100‑1 (MQ=255)                                                                                                    GCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGTTGGTGTGAGCGGGTGCCGGAAGCg  <  1:3144086‑M2/100‑1 (MQ=255)                                                                                                    |                                                                                                    TGAGGACGGTTACAGCCGCAGCGAGTCACTGTGGCTGGTGCGCGGCGGCGTGGCGAAACTGGATGAAGGTCACCGGCTGGCCGCACTCTGGCAGGCGCTGCCGGAAGAACTCCGCTTAAGTCCGCATCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGTTGGTGTGAGCGGGTGCCGGAAGCG  >  NC_000913/3619578‑3619776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.