| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3943543 | NA (NA) | 8 (0.070) | 4/156 | NT | 100% | intergenic (+33/‑161) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943583 | 0 (0.000) | intergenic (+73/‑121) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
GGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGA > NC_000913/3943484‑3943681 | ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 1:1118851‑M2/100‑1 (MQ=255)ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT > 2:1504132‑M2/1‑100 (MQ=255)ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 1:1863023‑M2/100‑1 (MQ=255) cTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattc < 1:1684894‑M2/100‑54 (MQ=255) acctTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcga < 2:144299‑M2/99‑56 (MQ=255) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa < 2:3198863‑M2/100‑57 (MQ=255) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa < 2:2024815‑M2/100‑57 (MQ=255) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa < 1:2234520‑M2/100‑57 (MQ=255) tAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaaccc < 1:2920034‑M2/100‑60 (MQ=255) atatCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccct < 1:2768680‑M2/100‑62 (MQ=255) tctcAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgtt < 1:105519‑M2/100‑65 (MQ=255) gtcttgagATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtg > 1:154567‑M2/4‑13 (MQ=255) gTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcct < 2:328166‑M2/100‑89 (MQ=255) tttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctg > 1:1843785‑M2/1‑11 (MQ=255) tttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctg > 2:2526783‑M2/1‑11 (MQ=255) tttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctg > 1:2546339‑M2/1‑11 (MQ=255) tttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctg > 2:3060322‑M2/1‑11 (MQ=255) tttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctg < 2:1162182‑M2/100‑90 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg < 2:2500783‑M2/100‑91 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaaccactgttaccgccgtgaaagggcggtgtcctgg > 1:1664251‑M2/1‑10 (MQ=255) cgatcttattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg > 2:3409049‑M2/7‑10 (MQ=255) tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggg < 1:2090154‑M2/100‑92 (MQ=255) tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggg > 1:867142‑M2/1‑9 (MQ=255) tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggg > 2:1314768‑M2/1‑9 (MQ=255) gggataTTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggc < 2:2323646‑M2/98‑93 (MQ=255) gagaTATTaaggcaggtgactttcactcacaaagcagcaagtggcgtcccctaggggattcgaacccctgataccgccgtgaaagggcggtgtcctgggc < 1:2050676‑M2/100‑93 (MQ=255) gagaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggc < 2:1283541‑M2/100‑93 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggctgtgtcctgggcc > 2:2243666‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 2:1002546‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 1:3146500‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 2:3357933‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 2:2710306‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc < 1:1739320‑M2/100‑94 (MQ=255) gaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcct > 2:475315‑M2/1‑6 (MQ=255) atatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctc > 2:1528096‑M2/1‑5 (MQ=255) atatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctc > 2:2973866‑M2/1‑5 (MQ=255) atatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctc < 1:2531471‑M2/100‑96 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct > 1:2305859‑M2/1‑4 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct > 1:1204666‑M2/1‑4 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct < 2:3387930‑M2/100‑97 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct < 1:1333286‑M2/100‑97 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct < 1:1718227‑M2/100‑97 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct < 2:1204670‑M2/100‑97 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct < 1:2563336‑M2/100‑97 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggagatcg < 1:3409025‑M2/100‑97 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta > 2:2768697‑M2/1‑3 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta > 2:2142432‑M2/1‑3 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta < 1:1388531‑M2/100‑98 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta < 2:1988100‑M2/100‑98 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta < 2:1752112‑M2/100‑98 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta < 2:1464740‑M2/100‑98 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta < 2:707454‑M2/100‑98 (MQ=255) atTaaggcaggtgacttgcactcacaaaccagcaagtggcgtcccctaggggatgcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta > 2:1453188‑M2/1‑3 (MQ=255) ttaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctag > 2:2747125‑M2/1‑2 (MQ=255) | GGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGA > NC_000913/3943484‑3943681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |