| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4209894 = | NA (NA) | 6 (0.060) | 4/156 | NT | 100% | intergenic (+45/‑149) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon |
| ? | NC_000913 | 4209912 = | 0 (0.000) | intergenic (+63/‑131) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
GGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATG > NC_000913/4209813‑4210011 | gagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtt > 2:2342225‑M2/100‑100 (MQ=255) agagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttt > 2:2482260‑M2/99‑100 (MQ=255) agagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcaaccgaagatgagttt > 1:488949‑M2/99‑100 (MQ=255) agagactcacgaacaactttcgttgttcagtgtttcaagtttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttt < 1:1911388‑M2/2‑1 (MQ=255) gagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtttt > 2:768013‑M2/98‑100 (MQ=255) tgaaacacgaacaactttcgttgttcagtggtacaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtttt < 1:1360657‑M2/3‑1 (MQ=255) agactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTg < 1:2484555‑M2/4‑1 (MQ=255) gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga < 1:2516772‑M2/5‑1 (MQ=255) gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga < 2:1844579‑M2/5‑1 (MQ=255) gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga > 2:127076‑M2/96‑100 (MQ=255) gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga > 1:477360‑M2/96‑100 (MQ=255) gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga > 1:1547011‑M2/96‑100 (MQ=255) ccgatctgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga < 1:3323056‑M2/5‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 2:1454100‑M2/6‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 2:1269088‑M2/6‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 1:1589642‑M2/6‑1 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga < 1:2327098‑M2/7‑1 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 2:2935288‑M2/6‑1 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 1:1040885‑M2/6‑1 (MQ=255) tcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGat > 2:3086398‑M2/93‑100 (MQ=255) tcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGat > 1:891912‑M2/93‑100 (MQ=255) tcacgaacaactttcggtgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgaggTTCGAGat > 1:1432165‑M2/93‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaatagcaaatatctcaaacatcacccgaagaggagtTTTGAGata > 1:1180975‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 1:1598733‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 1:2076869‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 2:2818233‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 1:2663721‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 2:2219320‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 2:1873369‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 1:2151350‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTAAGata > 2:2894350‑M2/92‑100 (MQ=255) acgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGatat < 1:692962‑M2/10‑1 (MQ=255) acgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGatat > 1:1848116‑M2/91‑100 (MQ=255) cgaacaactttcgttgttcagtgtttcaattttcagcttgctccagatttttaaagggcaaatatcacaaacttcacccgaagatgatcTTTGAGATAtt > 1:547956‑M2/90‑100 (MQ=255) cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt > 2:1831132‑M2/90‑100 (MQ=255) cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt > 2:2919457‑M2/90‑100 (MQ=255) cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt > 2:972947‑M2/90‑100 (MQ=255) gaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgaagatcgg > 2:3323079‑M2/89‑93 (MQ=255) aagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAg > 1:2486973‑M2/37‑100 (MQ=255) gagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgtt > 2:1804534‑M2/35‑100 (MQ=255) gagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgtt > 2:1804258‑M2/35‑100 (MQ=255) gagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgtt > 2:3130095‑M2/35‑100 (MQ=255) gcaaatatctcaaacatcacccgaagatgagTTTGAGATATTTGCTATTTAAAAATATGGATTAAGATGAAAATTGAAACACTGAACAACGAGAgttgt > 1:2128692‑M2/32‑99 (MQ=255) aatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCg > 1:2382909‑M2/30‑100 (MQ=255) TTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg < 2:1268346‑M2/100‑1 (MQ=255) TTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg > 1:306301‑M2/1‑100 (MQ=255) TTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg < 2:794204‑M2/100‑1 (MQ=255) | GGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATG > NC_000913/4209813‑4210011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |