New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381292 =	NA (NA)	26 (0.230)	24/160	NT	NA	noncoding (33/1331 nt)	IS2	repeat region
	?	NC_000913	381312 =	NA (NA)					noncoding (53/1331 nt)	IS2	repeat region

TACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATT  >  NC_000913/381213‑381356                                                                                                    |                                             tACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg                                              <  1:1004662/100‑1 (MQ=255)   cGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc                                            >  2:1182825/1‑100 (MQ=255)   cGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc                                            >  2:3217613/1‑100 (MQ=255)     ccATTGCTTATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCACCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc                                            <  1:3054843/98‑1 (MQ=255)     ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                          >  1:305108/1‑100 (MQ=255)     ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                          >  1:2311150/1‑100 (MQ=255)     ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                          <  2:437900/100‑1 (MQ=255)        ttGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                       <  1:68002/100‑1 (MQ=255)        ttGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                       <  1:673228/100‑1 (MQ=255)          gCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                     >  2:2470648/1‑100 (MQ=255)          gCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                     <  2:2568936/100‑1 (MQ=255)          gCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                     >  1:1161332/1‑100 (MQ=255)           ttccgatctgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt                                    <  1:2680403/92‑1 (MQ=255)            tGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGAACGGCCCCCTGAATCACCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt                                    <  1:764503/99‑1 (MQ=255)             gATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg                                  <  1:1324525/100‑1 (MQ=255)              attattGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGt                                 <  1:924438/100‑1 (MQ=255)                  ttGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                             <  1:651965/100‑1 (MQ=255)                   tgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                            >  1:2659125/1‑100 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTTATAGCCTGGCCCCATGAATCTCCAGACAAACAAAATCTCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           <  1:1254190/100‑1 (MQ=17)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAgatcggaa                           >  2:2680420/1‑93 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           >  2:1900621/1‑100 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           >  2:1008352/1‑100 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           >  1:1510116/1‑100 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCAAGACAACCAATATCACTTAAATAAGTGATAGACTTAATACTAGTTTTTAg                           >  1:404074/1‑100 (MQ=255)                     tgCCAGGACGAATAAACGCATAATTACTAGACTGGCCTCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGa                          <  1:1514681/100‑1 (MQ=255)                     tgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGa                          <  1:2235661/100‑1 (MQ=255)                      tccAGGACGAATCAACACATAATTACTATACTTGCCCCCTAAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTACTTTTTAGAc                         <  1:2857317/99‑1 (MQ=17)                      gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                         <  2:2554852/100‑1 (MQ=255)                      gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                         >  1:816838/1‑100 (MQ=255)                      gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                         >  2:3415797/1‑100 (MQ=255)                       ccAGGACGAATAATCGCATAATTATTATACTTTCCCCCTTTATTTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACt                        <  2:2895097/100‑1 (MQ=17)                       ccAGGACGAATAAACGCATAATTACTAGACTTGCTTTCTGAATCTCCAGTCAACCATTATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                         <  1:3049943/99‑1 (MQ=18)                        catgACGAATAAACGCATAATTACTAGACTGTCCCCATGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           <  1:531271/93‑1 (MQ=255)                        cAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACt                        >  2:2855538/1‑99 (MQ=255)                        cAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTa                       >  2:2808593/1‑100 (MQ=255)                         aGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAg                      <  2:174068/100‑1 (MQ=255)                          ttataaaTAAATGTATAATTAATACACTCGCCTCGTGAATCACCAGACAACCAATATCACATAAATAATTAATAGTCTTAATACCAGCTTTTAAACt                        <  1:2823131/92‑1 (MQ=2)                           gACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTc                    >  2:2606143/1‑100 (MQ=255)                           gACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTc                    <  2:629184/100‑1 (MQ=255)                             cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAt                  >  1:759042/1‑100 (MQ=255)                               aaTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTg                >  2:2401424/1‑100 (MQ=255)                               aaTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAATGATAGTCTTAATACTAGTTTTTAGACTAGTCATTg                >  2:2401447/1‑100 (MQ=255)                                aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg               <  1:1069335/100‑1 (MQ=255)                                 tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATCCTAGTTTTTAGACTAGTCATTGga              >  1:1535413/1‑100 (MQ=255)                                 tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga              >  1:180943/1‑100 (MQ=255)                                 tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga              <  2:2791695/100‑1 (MQ=255)                                 tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga              <  1:752515/100‑1 (MQ=255)                                  aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag             <  2:725262/100‑1 (MQ=255)                                  aaaCGCATAATTACTAGACTGGCCCCATGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag             <  2:1555428/100‑1 (MQ=255)                                   aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgaga            <  1:972250/100‑1 (MQ=255)                                   aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgaga            <  1:662858/100‑1 (MQ=255)                                   aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgaga            >  1:1018373/1‑100 (MQ=255)                                    aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGaa           >  2:2794741/1‑100 (MQ=40)                                     cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAc          >  1:313221/1‑100 (MQ=40)                                     cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAc          <  1:2606127/100‑1 (MQ=40)                                     cGCATAATTACTAGACTGGCAACCTGAATCTCCAGACAAACAATATCACTAAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAc          >  1:889679/1‑100 (MQ=14)                                       cATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACa         <  1:2292264/99‑1 (MQ=38)                                       cATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAg        >  2:2264195/1‑100 (MQ=38)                                       cATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTAATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAc          <  1:1040631/98‑1 (MQ=38)                                           aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatga    <  2:1135860/100‑1 (MQ=32)                                           aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgat      >  1:1560115/1‑98 (MQ=32)                                             tACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgatt  >  2:2104228/1‑100 (MQ=11)                                                                                                    |                                             TACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATT  >  NC_000913/381213‑381356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.