BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	707773 =	NA (NA)	4 (0.040)	4/160	NT	NA	noncoding (4/165 nt)	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
*	?	NC_000913	707805 =	NA (NA)	4 (0.040)	4/160	NT	NA	noncoding (36/165 nt)	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

Only 100 of 162 total aligned reads displayed.

ATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTA  >  NC_000913/707706‑707903

aTTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCaa                                                                                                    >  1:108486/1‑100 (MQ=255)

 tttAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAg                                                                                                   >  2:2652381/1‑100 (MQ=255)

 tttAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAg                                                                                                   >  1:921563/1‑100 (MQ=255)

 tttAACCGCACCGTTGGGCTGCGTCATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAg                                                                                                   <  1:15727/100‑1 (MQ=255)

 atcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCGTTTACGTCGCATCCGGCAAg                                                                                                   >  2:2832547‑M1/67‑100 (MQ=255)

  ttAACCGCACCGTTGGGCTGCGTTATCCCTGGGCGAAAGTAGGCGGGTAATTTTAACTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCaa                                                                                                    <  1:2330829/98‑1 (MQ=255)

  ttAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAgg                                                                                                  >  2:747782/1‑100 (MQ=255)

   tAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGa                                                                                                 >  1:2897009/1‑100 (MQ=255)

     aCCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAAc                                                                                               <  1:1438541/100‑1 (MQ=255)

     aCCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAAc                                                                                               >  2:1778719/1‑100 (MQ=255)

      ccGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACa                                                                                              <  2:387707/100‑1 (MQ=255)

       cGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAg                                                                                             <  2:1442880/100‑1 (MQ=255)

       cGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAg                                                                                             >  2:2355054/1‑100 (MQ=255)

       cGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAg                                                                                             <  2:3157115/100‑1 (MQ=255)

        gCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGa                                                                                            <  2:1261609/100‑1 (MQ=255)

            cGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGGCaaa                                                                                        >  1:2902098/1‑100 (MQ=255)

             gTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAAc                                                                                       <  1:3158034/100‑1 (MQ=255)

             gTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAAc                                                                                       <  2:1618618/100‑1 (MQ=255)

              ttGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCTCATCCGGCAAGGAACAGACAAACa                                                                                      <  1:890437/100‑1 (MQ=255)

              ttGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACa                                                                                      <  2:3254523/100‑1 (MQ=255)

                 ggCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGtt                                                                                   >  2:1644155/1‑100 (MQ=255)

                  gCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGttt                                                                                  <  2:2800834/100‑1 (MQ=255)

                  gCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGttt                                                                                  <  2:2598325/100‑1 (MQ=255)

                  gCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGttt                                                                                  <  2:1523483/100‑1 (MQ=255)

                   cTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTc                                                                                 >  1:1738759/1‑100 (MQ=255)

                       gTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAAc                                                                             >  2:1181620/1‑100 (MQ=255)

                       gTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAAc                                                                             >  2:2901278/1‑100 (MQ=255)

                        tGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACg                                                                            >  1:3362974/1‑100 (MQ=255)

                         gATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCTTCCGGCAAGGAACAGACAAACAGTTTCAAACgn                                                                           <  1:2258984/100‑2 (MQ=255)

                         gATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGc                                                                           <  2:466727/100‑1 (MQ=255)

                         gATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGc                                                                           <  2:785133/100‑1 (MQ=255)

                           tACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTa                                                                         >  2:1164796/1‑100 (MQ=255)

                           tACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTa                                                                         <  2:3266505/100‑1 (MQ=255)

                            aCCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTaa                                                                        <  2:1738767/100‑1 (MQ=255)

                             ccTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGCCAAACAGTTTCAAACGCTaaa                                                                       >  1:937250/1‑100 (MQ=255)

                             ccTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTaaa                                                                       >  1:2732437/1‑100 (MQ=255)

                              cTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAAt                                                                      >  2:88164/1‑100 (MQ=255)

                               tGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGCCAAACAGTTTCAAACGCTAAAtt                                                                     >  1:1968050/1‑100 (MQ=255)

                                gggCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTg                                                                    >  2:2324741/1‑100 (MQ=255)

                                   cGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACATCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTACCt                                                                 >  1:563081/1‑100 (MQ=255)

                                     aaaGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGa                                                               >  2:608642/1‑100 (MQ=255)

                                        gTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATgc                                                            <  1:3203584/100‑1 (MQ=255)

                                         tAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATgcg                                                           >  2:1025893/1‑100 (MQ=255)

                                          aGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATgcgc                                                          >  1:1114612/1‑100 (MQ=255)

                                           ggCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCt                                                         >  2:1402474/1‑100 (MQ=255)

                                           ggCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCt                                                         >  1:1007167/1‑100 (MQ=255)

                                             cGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTAc                                                       >  1:443617/1‑100 (MQ=255)

                                                gTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCt                                                    <  2:2183673/100‑1 (MQ=255)

                                                gTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCt                                                    <  2:2382724/100‑1 (MQ=255)

                                                 tAATTTTAAGTTCCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCt                                                    <  1:1692022/99‑1 (MQ=255)

                                                  aaTTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTa                                                  >  2:3086919/1‑100 (MQ=255)

                                                     tttAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATc                                                <  2:807026/99‑1 (MQ=255)

                                                       tAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAgg                                             <  2:2691523/100‑1 (MQ=255)

                                                          gTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCt                                          >  1:344720/1‑100 (MQ=255)

                                                           tttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                         >  2:1242866/1‑100 (MQ=255)

                                                           tttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                         >  1:2565174/1‑100 (MQ=255)

                                                           tttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                         >  2:1966531/1‑100 (MQ=255)

                                                           tttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                         >  2:2706204/1‑100 (MQ=255)

                                                             tCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGACCAGACAAACAGTCTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACa                                       <  1:1992726/100‑1 (MQ=255)

                                                              cGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAt                                      >  2:1329879/1‑100 (MQ=255)

                                                                 tATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAt                                   >  2:2640190/1‑100 (MQ=255)

                                                                 cttgccggatgcgacgtaaacgccccatccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAt                                   >  2:2832547‑M2/35‑100 (MQ=255)

                                                                 ctTGCCGGATGCGACGTAAACGCCCCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAt                                   <  2:1405346‑M1/98‑1 (MQ=255)

                                                                  ttgccggatgcgacgtaaacgccccatccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtc                                  >  1:1430789‑M2/34‑100 (MQ=255)

                                                                   tgccggatgcgacgtaaacgccccatccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtct                                 >  1:1737172‑M2/33‑100 (MQ=255)

                                                                     ccggatgcgacgtaaacgccccatccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATctct                               >  1:2439940‑M2/31‑100 (MQ=255)

                                                                      CGGATGGGGCGTTTACGTCGCATACGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTg                              <  1:2178255‑M1/100‑1 (MQ=255)

                                                                       ggATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGAAAAACAGTTTCAAACGCTAAATTTACTGATGTGTTACGGTTATCAGGTCTACATGAtttgtgt                             >  1:2993182/1‑94 (MQ=255)

                                                                       GGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGc                             <  1:1620582‑M1/100‑1 (MQ=255)

                                                                       GGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGc                             <  2:86206‑M1/100‑1 (MQ=255)

                                                                       GGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGc                             >  1:2533430‑M1/1‑100 (MQ=255)

                                                                          TGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAat                          >  1:1558509‑M1/1‑100 (MQ=255)

                                                                           GGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAata                         <  2:1431597‑M1/100‑1 (MQ=255)

                                                                           GGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAata                         <  2:416045‑M1/100‑1 (MQ=255)

                                                                            gggCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAatat                        <  2:1268236/100‑1 (MQ=255)

                                                                            gggCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAatat                        >  1:2509149/1‑100 (MQ=255)

                                                                                gTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATAtt                     >  1:1335701/1‑99 (MQ=255)

                                                                                 tttACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGa                   >  2:1333503/1‑100 (MQ=255)

                                                                                  ttACGGCGCATCCGGCAAGGAACAGACAAACAGGTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTg                    <  1:860770/98‑1 (MQ=255)

                                                                                   tACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGt                 >  2:480090/1‑100 (MQ=255)

                                                                                   tACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGt                 >  2:2022534/1‑100 (MQ=255)

                                                                                    aCGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGtt                >  2:2130005/1‑100 (MQ=255)

                                                                                    aCGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGtt                <  1:1242862/100‑1 (MQ=255)

                                                                                      gTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTg              >  2:1861724/1‑100 (MQ=255)

                                                                                      gTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGATCTCTGCAATATATTGAGTTTg              >  2:350171/1‑100 (MQ=255)

                                                                                         gCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGt           <  2:2956474/100‑1 (MQ=255)

                                                                                         gCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGt           >  1:2445169/1‑100 (MQ=255)

                                                                                          tatccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTg          >  2:1280529‑M2/10‑100 (MQ=255)

                                                                                          catccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTg          <  1:2235543‑M2/91‑1 (MQ=255)

                                                                                          catccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTg          >  1:1332235‑M2/10‑100 (MQ=255)

                                                                                          catccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTg          >  2:963035‑M2/10‑100 (MQ=255)

                                                                                             ccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCtt       >  2:3191024‑M2/7‑100 (MQ=255)

                                                                                               ggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCtttt     <  1:2810818‑M2/96‑1 (MQ=255)

                                                                                               ggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCtttt     >  2:597143‑M2/5‑100 (MQ=255)

                                                                                               ggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCtttt     >  2:1951066‑M2/5‑100 (MQ=255)

                                                                                                gcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTg    >  2:3179768‑M2/4‑100 (MQ=255)

                                                                                                gcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTg    <  1:113804‑M2/97‑1 (MQ=255)

                                                                                                 caAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGt   <  1:593597‑M2/98‑1 (MQ=255)

                                                                                                 caAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGt   <  2:1007170‑M2/98‑1 (MQ=255)

                                                                                                  aAGGAACAGACAAACAGATTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTa  >  2:62537‑M2/2‑100 (MQ=255)

ATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTA  >  NC_000913/707706‑707903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.