| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1097245 = | NA (NA) | 5 (0.040) | 4/174 | NT | 100% | intergenic (+416/+320) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097274 = | 0 (0.000) | intergenic (+445/+291) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
TACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCT > NC_000913/1097175‑1097373 | tcgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacgcagtgagcgggctgcc < 1:3073203‑M2/1‑1 (MQ=255)tcgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacgcagtgagcgggctgcc < 2:2100172‑M2/1‑1 (MQ=255) cgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagagcgtgaacgcagtgagcgggctgccc < 1:3172497‑M2/2‑1 (MQ=255) cgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacgcagtgagtgggctgccc > 2:3197763‑M2/99‑100 (MQ=255) cgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacgcagtgagcgggctgccc > 1:751185‑M2/99‑100 (MQ=255) cgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacgcagtgagcgggctgccc < 2:1659470‑M2/2‑1 (MQ=255) cgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacgcagtgagcgggctgccc < 2:3109801‑M2/2‑1 (MQ=255) tatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacacagcgagcgggctgccctc > 2:254455‑M2/97‑98 (MQ=255) cgacaactggcgacagccagttggacagaccgtgaacgcagtgagcgggctgcCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATc > 1:1065642‑M2/54‑100 (MQ=255) ccagttggacagaccgtgaacgcagtgagcgggctgcCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa > 2:1682532‑M2/38‑100 (MQ=255) agttggacagaccgtgaacgcagtgagcgggctgcCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGCCCGGGCTTCTCATCCCCCCGCTGTGTGCAata > 1:2036263‑M2/36‑100 (MQ=255) ggacagaccgtgaacgcagtgagcggtctgtCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACg > 2:175348‑M2/32‑100 (MQ=255) ccgtgaacgcagtgagcgggctgcCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGaaaaaaa < 1:1682525‑M2/76‑1 (MQ=255) ggCCAACTGGCTGACGCCAGTTGTCGAACCCAGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGct > 2:2301942‑M2/3‑100 (MQ=255) CCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGctct > 1:366704‑M2/1‑100 (MQ=255) | TACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCT > NC_000913/1097175‑1097373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |