| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1570970 | NA (NA) | 21 (0.180) | 12/168 | NT | 100% | coding (1076/1401 nt) | gadB | glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | = 1570988 | 0 (0.000) | coding (1058/1401 nt) | gadB | glutamate decarboxylase B, PLP‑dependent | |||||
TCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCCAGATAAGCGGCAACCTGGTAAGAGGCGTTCTGTACTTTGGTATAGCCTTCACGACCGAGGCGCAGGAATTCATAGTACTGTGCAATTACCTGACCCGCCG > NC_000913/1570889‑1571087 | tCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCCA < 2:2104875‑M2/100‑1 (MQ=255)tCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCCA < 1:343492‑M2/100‑1 (MQ=255) cACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCCAn > 1:3327053‑M2/1‑99 (MQ=255) tttGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCGGATGAAATC‑GCCAaactggggccgtat > 2:3379356‑M2/1‑86 (MQ=255) ggATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑GATGAAATCGCCAaactggggccgtatgagttcatctgtacggg > 1:2131856‑M2/1‑69 (MQ=255) gCCCCAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaa < 1:1229771‑M2/100‑74 (MQ=255) gCCCCAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaa < 1:3061246‑M2/100‑74 (MQ=255) gCCCCAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaa < 2:1755233‑M2/100‑74 (MQ=255) ccccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaa < 1:1145320‑M2/100‑75 (MQ=255) ccccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaa > 2:1145324‑M2/1‑26 (MQ=255) cccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaag < 2:1675297‑M2/100‑76 (MQ=255) cccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaag < 2:1125001‑M2/100‑76 (MQ=255) cccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaa < 1:2648054‑M2/99‑75 (MQ=255) ccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaaga < 2:789250‑M2/100‑77 (MQ=255) ccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaaga < 2:3301732‑M2/100‑77 (MQ=255) cAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagat < 2:1919977‑M2/100‑78 (MQ=255) aGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatg < 2:2614464‑M2/100‑79 (MQ=255) aGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatg < 2:1346963‑M2/100‑79 (MQ=255) gTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatgg < 2:561504‑M2/100‑80 (MQ=255) gTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatgg < 2:1744839‑M2/100‑80 (MQ=255) gTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatgg < 2:241486‑M2/100‑80 (MQ=255) gTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatgg < 2:2226089‑M2/100‑80 (MQ=255) ttGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtg < 2:3040589‑M2/100‑82 (MQ=255) ggCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaa < 2:2720163‑M2/100‑84 (MQ=255) cgatcTGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgg > 2:1985910‑M2/3‑10 (MQ=255) cGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggatac < 2:2584252‑M2/100‑96 (MQ=255) cGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggatac < 1:1915950‑M2/100‑96 (MQ=255) cGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatccaggcggattgcttcaaactgaaagatggtgaagatccgggatac < 1:1477827‑M2/100‑96 (MQ=255) cGCCAaactggggccgtatgagatcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggatac < 1:433732‑M2/100‑96 (MQ=255) gCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggataca < 2:10158‑M2/100‑97 (MQ=255) gCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggataca < 1:3083706‑M2/100‑97 (MQ=255) gCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggataca < 2:1155799‑M2/100‑97 (MQ=255) gCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccggagatcg < 1:1985899‑M2/100‑97 (MQ=255) ccAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggatacac < 2:1241710‑M2/100‑98 (MQ=255) ccAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggatacac > 2:3377167‑M2/1‑3 (MQ=255) cAaactgggtccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgtttcaaactgaaagatggtgaagatccgggatacacc > 2:2361413‑M2/1‑2 (MQ=255) cAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaagcatcccagcggtttgcttcaaactgaaagatggtgaagatccgggataaa < 1:880660‑M2/98‑97 (MQ=255) aaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggatacaccc > 2:3166941‑M2/1‑1 (MQ=255) aaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggatacaccc > 1:2710309‑M2/1‑1 (MQ=255) aaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggatacaccc > 1:374184‑M2/1‑1 (MQ=255) aaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtgaagatccgggatacaccc > 2:562459‑M2/1‑1 (MQ=255) | TCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCCAGATAAGCGGCAACCTGGTAAGAGGCGTTCTGTACTTTGGTATAGCCTTCACGACCGAGGCGCAGGAATTCATAGTACTGTGCAATTACCTGACCCGCCG > NC_000913/1570889‑1571087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |