BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1929976	NA (NA)	4 (0.030)	3/166	NT	NA	noncoding (54/84 nt)	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	= 1930006	NA (NA)	4 (0.030)	3/166	NT	NA	noncoding (84/84 nt)	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 161 total aligned reads displayed.

GTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCGGCACTTTT  >  NC_000913/1929909‑1930105

     aTGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACCGTc                                                                                              >  1:2764792/1‑100 (MQ=255)

      tGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTTCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCa                                                                                             >  2:1806782/1‑100 (MQ=255)

      tGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCa                                                                                             <  1:694409/100‑1 (MQ=255)

       gCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCaa                                                                                            >  2:1809291/1‑100 (MQ=255)

        cTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAAt                                                                                           <  1:534029/100‑1 (MQ=255)

          gATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCg                                                                                         <  2:275009/100‑1 (MQ=255)

             ttccgatctcGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAAt                                                                                      <  2:1095197/91‑1 (MQ=255)

             tGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAAt                                                                                      <  2:838362/100‑1 (MQ=255)

             tGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAAt                                                                                      <  2:1477049/100‑1 (MQ=255)

              gCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAAtt                                                                                     >  1:2977692/1‑100 (MQ=255)

               nccGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTa                                                                                    >  1:1353068/2‑100 (MQ=255)

               cccGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTa                                                                                    <  1:1539955/100‑1 (MQ=255)

               cccGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTa                                                                                    <  2:1370070/100‑1 (MQ=255)

               cccGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTa                                                                                    <  1:2179216/100‑1 (MQ=255)

                ccGATGCGACCCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTAt                                                                                   <  1:2249608/100‑1 (MQ=255)

                  gATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCa                                                                                 <  2:1610695/100‑1 (MQ=255)

                  gATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCa                                                                                 <  2:1888664/100‑1 (MQ=255)

                  gATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCa                                                                                 <  1:2068767/100‑1 (MQ=255)

                   aTGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAg                                                                                <  2:1980792/100‑1 (MQ=255)

                   aTGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAg                                                                                <  1:2989952/100‑1 (MQ=255)

                      cGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAAtagatcggaa                                                                             >  1:1095194/1‑91 (MQ=255)

                      cGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAg                                                                             >  2:1199341/1‑100 (MQ=255)

                      cGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAg                                                                             >  1:198221/1‑100 (MQ=255)

                       gACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGTGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGc                                                                            <  1:1013969/100‑1 (MQ=255)

                             gTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTaa                                                                      >  2:2141398/1‑100 (MQ=255)

                                gCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCGGCCAACAGTCAATCGAATTATCAGAAGCCATTAAcgc                                                                   <  1:1827787/100‑1 (MQ=255)

                                  gTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAAcgccg                                                                 <  1:1710255/100‑1 (MQ=255)

                                   tcttctCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAAcgccgc                                                                <  2:1492190/100‑1 (MQ=255)

                                     ttctCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTg                                                              >  2:2352828/1‑100 (MQ=255)

                                     ttctCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTg                                                              >  2:3337434/1‑100 (MQ=255)

                                       ctcAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGat                                                            >  1:977122/1‑100 (MQ=255)

                                         cAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGatat                                                          >  2:2690315/1‑100 (MQ=255)

                                         cAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGatat                                                          >  2:800472/1‑100 (MQ=255)

                                             ccTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCg                                                      <  1:1130342/100‑1 (MQ=255)

                                             ccTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCg                                                      <  1:2939328/100‑1 (MQ=255)

                                              cTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGc                                                     >  1:2178196/1‑100 (MQ=255)

                                              cTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGc                                                     <  1:3285896/100‑1 (MQ=255)

                                               tACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGcc                                                    <  2:2919259/100‑1 (MQ=255)

                                                aCGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCa                                                   <  2:963531/100‑1 (MQ=255)

                                                 cGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCGTTAACGCCGCTGATATTCCGCCAt                                                  >  2:1448215/1‑100 (MQ=255)

                                                  gATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCAtt                                                 >  2:2908739/1‑100 (MQ=255)

                                                    ttGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTcc                                               <  2:60100/100‑1 (MQ=255)

                                                      gtggtgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCg                                             >  1:622440/1‑100 (MQ=255)

                                                        ggtgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTGAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCt                                           >  1:2781550/1‑100 (MQ=255)

                                                        ggtgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCt                                           >  1:1883275/1‑100 (MQ=255)

                                                         gtgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCtt                                          >  1:2598218/1‑100 (MQ=255)

                                                         gtgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCtt                                          >  2:3116756/1‑100 (MQ=255)

                                                          tgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCttt                                         <  1:1737523/100‑1 (MQ=255)

                                                            ctcgcTGGGGCGGACAAGGCACTCGCGCCGCATCTGGCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGc                                       <  1:2641049/96‑1 (MQ=255)

                                                            cGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGc                                       <  1:800470/100‑1 (MQ=255)

                                                            cGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGc                                       <  2:3235944/100‑1 (MQ=255)

                                                            cGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGc                                       <  1:4038/100‑1 (MQ=255)

                                                             gTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCa                                      >  2:208942/1‑100 (MQ=255)

                                                              ttCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAg                                     <  2:3096012/100‑1 (MQ=255)

                                                                cTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTc                                   >  2:3392587/1‑100 (MQ=255)

                                                                 tGGGGCGGACAAGGCACTCGCGCCGCATCCGCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaa                                  <  1:550044‑M2/100‑68 (MQ=255)

                                                                  ggggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCa                                 >  1:413021/1‑100 (MQ=255)

                                                                  ggggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCa                                 >  2:3324397/1‑100 (MQ=255)

                                                                  ggggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCa                                 >  1:1398731/1‑100 (MQ=255)

                                                                   gggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCAc                                >  1:2384434/1‑100 (MQ=255)

                                                                   gggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCAc                                >  2:1594134/1‑100 (MQ=255)

                                                                   gggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCAc                                >  2:897350/1‑100 (MQ=255)

                                                                   gggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGGCCAc                                >  2:1353924/1‑100 (MQ=255)

                                                                    ggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACg                               >  2:3251358/1‑100 (MQ=255)

                                                                    ggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACg                               <  1:2141387/100‑1 (MQ=255)

                                                                     gCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGc                              <  2:372331/100‑1 (MQ=255)

                                                                     gCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGc                              <  2:366293/100‑1 (MQ=255)

                                                                      cGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCt                             >  1:2199437/1‑100 (MQ=255)

                                                                       ggACAAGGCACTCGCGCCGCATCCGCCAACAGTCAACCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTg                            >  2:2412474/1‑100 (MQ=255)

                                                                        gACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGa                           >  2:2505808/1‑100 (MQ=255)

                                                                         aCAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGAc                          >  2:1854646/1‑100 (MQ=255)

                                                                            aGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTg                       >  2:3220325/1‑100 (MQ=255)

                                                                            aGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATAAGAAGCCATTAACGCCGCTCATATTCCGCCCTTAACGCTTTGCAGTCCACGCTGACCt                        <  1:1535877/99‑1 (MQ=255)

                                                                             ggCACTCGCGCCGCATCCGCCACCAGTCAATCGAATTATCAGCAGCCATTAACGCCGCTGATCTTCCGCCATTCCCGCTTTGCAGTCCACGCTCACCTgg                      >  1:2798808/1‑100 (MQ=255)

                                                                             ggCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTgg                      >  2:769385/1‑100 (MQ=255)

                                                                             ggCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTgg                      >  1:2127358/1‑100 (MQ=255)

                                                                             ggCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTgg                      <  2:1267148/100‑1 (MQ=255)

                                                                              gCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGt                     <  1:2532516/100‑1 (MQ=255)

                                                                              gCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGt                     <  1:2567818/100‑1 (MQ=255)

                                                                               cACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTa                    <  2:668790/100‑1 (MQ=255)

                                                                               cACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTa                    >  2:559403/1‑100 (MQ=255)

                                                                                aCTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTan                   <  1:595374/100‑2 (MQ=255)

                                                                                 cTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAAt                  <  2:2547918/100‑1 (MQ=255)

                                                                                   cgcgCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGa                >  1:1854338/1‑100 (MQ=255)

                                                                                   cgcgCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGa                >  2:32542/1‑100 (MQ=255)

                                                                                     cgccgcATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAat              <  1:1081309/100‑1 (MQ=255)

                                                                                     cgccgcATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAat              >  1:3097773/1‑100 (MQ=255)

                                                                                      gccgcATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAata             >  1:3148002/1‑100 (MQ=255)

                                                                                        cgcATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATc           <  2:1748674/100‑1 (MQ=255)

                                                                                         gcATCCGCCAGCAGTCAATCGAATTATCCGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTGTGCAGTCCACGCTGACCTGCTAATGAATATct          >  2:1015659/1‑99 (MQ=255)

                                                                                         gcATCCGCCAACAGTCAATCGAATTATCAGCAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCCGTCCACGCTGACCTGGTAATGAATATCg          >  1:476753/1‑100 (MQ=255)

                                                                                         gcATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCg          <  1:2444176/100‑1 (MQ=255)

                                                                                         gcATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCg          >  2:2094659/1‑100 (MQ=255)

                                                                                          cATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCgg         <  2:587503/100‑1 (MQ=255)

                                                                                             ccGCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaagcaatgccactcaaaacgacaaactactt      <  1:1958080‑M2/100‑96 (MQ=255)

                                                                                             ccGCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaacaatgccactcaaaacgacaaactactt      <  1:1010463‑M2/100‑96 (MQ=255)

                                                                                              cGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCGGCACt     >  2:3030502/1‑100 (MQ=255)

                                                                                               gCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcaacatcaaacaatgccactcaaaacgacaaactactttc    >  2:2579555‑M2/1‑3 (MQ=255)

                                                                                                 cAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCGGCACtttt  <  1:656234/100‑1 (MQ=255)

                                                                                                 cAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCGGCACtttt  <  2:3185731/100‑1 (MQ=255)

GTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCGGCACTTTT  >  NC_000913/1929909‑1930105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.