New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2304654 =	NA (NA)	7 (0.060)	6/164	NT	100%	noncoding (238/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	2304670 =	0 (0.000)					noncoding (254/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAG  >  NC_000913/2304571‑2304769                                                                                                    |                                                                                                    gtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgcctta                                                                                                     <  2:29057‑M2/1‑1 (MQ=255)  tggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttAt                                                                                                    >  2:3366103‑M2/99‑100 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                   <  2:3180746‑M2/3‑1 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                   <  2:1736316‑M2/3‑1 (MQ=255)    gagtacgtcgcagcggtggaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                  <  1:2825771‑M2/4‑1 (MQ=255)    gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                  <  2:1657637‑M2/4‑1 (MQ=255)     agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttggatgtcggatgcggcgtaaccgccttATcc                                                                                                  >  1:2648753‑M2/96‑99 (MQ=255)     agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtgaccgccttATCCg                                                                                                 >  1:304026‑M2/96‑100 (MQ=255)     agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                 >  2:2688102‑M2/96‑100 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa                                                                                                >  2:3308663‑M2/95‑100 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa                                                                                                >  2:2138809‑M2/95‑100 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa                                                                                                >  2:1247491‑M2/95‑100 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcgtgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                  >  1:3368799‑M2/95‑98 (MQ=255)       cacttcggagcggtgtaagcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc                                                                                               <  1:3013048‑M2/7‑1 (MQ=255)       cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc                                                                                               <  1:2480593‑M2/7‑1 (MQ=255)       cacttcacagcggtgtagacctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc                                                                                               <  2:590617‑M2/7‑1 (MQ=255)         cttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttatccgccct                                                                                             >  2:1558052‑M2/92‑96 (MQ=255)         cttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttGTCTgacgt                                                                                             >  1:2079945‑M2/92‑98 (MQ=255)              gaggggggtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttCTCCGacc                                                                                              <  1:2899549‑M2/8‑2 (MQ=255)                                                                         agatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGa                             >  1:2904888‑M2/28‑100 (MQ=255)                                                                          gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                            >  1:1552517‑M2/27‑100 (MQ=255)                                                                           atgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCTAGCCGGTTGCCTGCTGCGAGGCTGGCGCGTCTTCTCAGCCCTACACGGCtg                                >  1:3039699‑M2/26‑95 (MQ=255)                                                                             gtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTg                         >  2:3341854‑M2/24‑100 (MQ=255)                                                                              tcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGc                        >  2:2758929‑M2/23‑100 (MQ=255)                                                                                ggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTc                      >  1:891731‑M2/21‑100 (MQ=255)                                                                                ggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCCGGCGCGTCTTATCAGGCCTACACCGCTGGGAAGTGc                        >  1:2375550‑M2/21‑98 (MQ=255)                                                                                                    ATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAg  <  2:2413106‑M2/100‑1 (MQ=255)                                                                                                    |                                                                                                    GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAG  >  NC_000913/2304571‑2304769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.