New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2511439NA (NA)9 (0.080) 7/164 NT NA noncoding (88/88 nt) REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3231282 = NA (NA)noncoding (31/283 nt) REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 192 total aligned reads displayed.

TCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC  >  NC_000913/3231183‑3231380
                                                                                                   |                                                                                                   
tcCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGccc                                                                                                     <  2:3054926/100‑1 (MQ=255)
 ccTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCt                                                                                                    >  1:1978248/1‑100 (MQ=255)
 ccTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCt                                                                                                    >  1:1733056/1‑100 (MQ=255)
   tGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTAc                                                                                                  <  2:1669774/100‑1 (MQ=255)
   tGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTAc                                                                                                  <  2:1380468/100‑1 (MQ=255)
   tGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTAc                                                                                                  >  2:651996/1‑100 (MQ=255)
    ggAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACa                                                                                                 >  2:641253/1‑100 (MQ=255)
     gatctccGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAt                                                                                                <  1:24423/95‑1 (MQ=255)
      aGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAtg                                                                                               <  2:195972/100‑1 (MQ=255)
       gTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAtgt                                                                                              >  2:427434/1‑100 (MQ=255)
       gTGCCACGCATTTGTATATGTTGTATAACGATTTTTGCCGTAAGCAATAATTTGCAACTGCTGGCAGATGCGGCGAAAACGCCTTATCCGCCCTACa                                                                                                 <  1:754103/97‑1 (MQ=38)
         tccGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAtgtg                                                                                             <  1:2070947/98‑1 (MQ=255)
         cttccgatcttGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                                                            <  1:507815/91‑1 (MQ=255)
          ccGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAtagatc                                                                                           >  2:24423/1‑95 (MQ=255)
          ccGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCa                                                                                           >  2:2187455/1‑100 (MQ=255)
          ccGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCa                                                                                           <  2:2498217/100‑1 (MQ=255)
           cgcgCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCaa                                                                                          >  1:938089/1‑100 (MQ=255)
              gcATTTGTATATGTTGTATAACGATTTTTTCCGTAATCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcc                                                                                       <  1:3181845/100‑1 (MQ=255)
                aTTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcctc                                                                                     >  2:1496296/1‑100 (MQ=255)
                 tttGTATATGTTGTATAACGATTTTTTCCGTATGCAATAATTTGCAACTGCTATTGGAGGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcctcc                                                                                    <  1:650757/100‑1 (MQ=37)
                 tttGTATATGTTGTATAACGATTTTTTCCGTAAGCTATAATTTGCAACTGCTGGCTGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcctcc                                                                                    >  1:1895608/1‑100 (MQ=255)
                 tttGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcctcc                                                                                    <  2:1002905/100‑1 (MQ=255)
                 tttGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcctcc                                                                                    <  2:2601334/100‑1 (MQ=255)
                 tttGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcctcc                                                                                    >  2:2951227/1‑100 (MQ=255)
                   tGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTACTGGCGGATGCGGCGTAAACACCTTATCCGACCTACATGTCCAAtcctcc                                                                                    >  1:3194532/1‑98 (MQ=37)
                    gTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTg                                                                                  <  1:1556075/99‑1 (MQ=255)
                     tataTGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGc                                                                                >  2:3302020/1‑100 (MQ=255)
                     tataTGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGc                                                                                >  1:1745761/1‑100 (MQ=255)
                        atGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCgg                                                                            <  1:481640/100‑1 (MQ=255)
                        atGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCgg                                                                            >  1:1217987/1‑100 (MQ=255)
                         tgttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGa                                                                           <  2:533477/100‑1 (MQ=255)
                         tgttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGa                                                                           >  2:2937424/1‑100 (MQ=255)
                          gttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCGTACATGTGCAATCCTCCTGGCCGGAt                                                                          >  2:1418545/1‑100 (MQ=255)
                          gttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGAt                                                                          >  1:2900551/1‑100 (MQ=255)
                           ttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATa                                                                         >  2:2383468/1‑100 (MQ=255)
                            tgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaa                                                                        >  1:2740727/1‑100 (MQ=255)
                            tgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaa                                                                        >  1:2928925/1‑100 (MQ=255)
                            tgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaa                                                                        >  1:1655040/1‑100 (MQ=255)
                            tgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaa                                                                        >  1:923277/1‑100 (MQ=255)
                              tataACGATTTTTTCCGTAAGCAATAATGTGCAACTGCTGGCGTATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaaaa                                                                      <  1:2180775/100‑1 (MQ=255)
                               ataACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAc                                                                     <  2:901029/100‑1 (MQ=255)
                                taACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcg                                                                    >  1:3352178/1‑100 (MQ=255)
                                taACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcg                                                                    >  1:2711138/1‑100 (MQ=255)
                                taACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCCCCTGGCCGGATAAAAcg                                                                    >  1:2580164/1‑100 (MQ=255)
                                 aaCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgc                                                                   >  1:2995254/1‑100 (MQ=255)
                                  aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgcg                                                                  <  1:1782291/100‑1 (MQ=255)
                                  aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgcg                                                                  >  2:953504/1‑100 (MQ=255)
                                  aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCACTACATGTGCAATCCTCCTGGCCGGATAAAAcgcg                                                                  >  1:1177071/1‑100 (MQ=255)
                                   cGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCgg                                                                 <  2:3164847/100‑1 (MQ=255)
                                   cGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCgg                                                                 <  1:1607484/100‑1 (MQ=255)
                                   cGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCgg                                                                 <  2:2218383/100‑1 (MQ=255)
                                   cGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCgg                                                                 >  2:605587/1‑100 (MQ=255)
                                   cGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCgg                                                                 >  1:1348695/1‑100 (MQ=255)
                                    gATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGc                                                                <  2:1238627/100‑1 (MQ=255)
                                    gATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGc                                                                <  2:685625/100‑1 (MQ=255)
                                            ccGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTg                                                        <  2:2025253/100‑1 (MQ=255)
                                            ccGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTg                                                        <  2:1217991/100‑1 (MQ=255)
                                            ccGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTg                                                        <  2:2135012/100‑1 (MQ=255)
                                             cGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGc                                                       <  1:427432/100‑1 (MQ=255)
                                              gTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCa                                                      >  1:871094/1‑100 (MQ=255)
                                                aaGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATc                                                    >  1:1934079/1‑100 (MQ=255)
                                                  gCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCg                                                  >  1:203863/1‑100 (MQ=14)
                                                   cAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCgg                                                 <  2:3262236/100‑1 (MQ=255)
                                                    aataatTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGc                                                >  2:1287402/1‑100 (MQ=255)
                                                     ataatTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCa                                               >  1:3066210/1‑100 (MQ=255)
                                                       aatTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAAc                                             <  2:938091/100‑1 (MQ=255)
                                                             naaCTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCAcc                                       >  2:1634346/2‑100 (MQ=255)
                                                             cAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCAcc                                       >  2:1705442/1‑100 (MQ=255)
                                                               aCTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACcgc                                     >  2:129818/1‑100 (MQ=255)
                                                                ctgctgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACcgcg                                    <  2:764623/100‑1 (MQ=255)
                                                                   ctgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCa                                 >  2:3008859/1‑100 (MQ=255)
                                                                    tgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCAc                                <  2:3085745/100‑1 (MQ=255)
                                                                    gggcggataaggcgtttacgccgcatgcgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCAc                                >  2:2083359‑M2/32‑100 (MQ=255)
                                                                        ggataaggcgtttacgccgcatccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGc                            >  2:353608‑M2/28‑100 (MQ=255)
                                                                        ggataaggcgtttacgccgcatccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGc                            >  1:2132286‑M2/28‑100 (MQ=255)
                                                                        ggataaggcgtttacgccgcatccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGc                            >  2:734720‑M2/28‑100 (MQ=255)
                                                                         gataaggcgtttacgccgcatccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCg                           >  2:2702631‑M2/27‑100 (MQ=255)
                                                                         gATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCg                           <  2:1559224/100‑1 (MQ=255)
                                                                              ggcgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCgagatc                      >  2:2735608/1‑95 (MQ=255)
                                                                              ggcgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATgc                      >  2:832024/1‑100 (MQ=255)
                                                                               gcgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATgcg                     >  2:3017302/1‑100 (MQ=255)
                                                                                cgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATgcgg                    <  1:1229320/100‑1 (MQ=255)
                                                                                  tAAACGCCTTATCCGCCCTACATGTGCACTCCCGCTGGCCGGATAAGACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATgcggc                   <  1:24481/99‑1 (MQ=11)
                                                                                  tAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGAtaaggcg                  <  2:1794969/100‑7 (MQ=255)
                                                                                   aaaCGCCTTATCCGCCCTACATGTGCAATCCTCCTTGCCGCGTAAAACTTTTCTTTTTTTTCATCCGGCAACTGCACCGCGCCACTGGCGGATgcggcg                  >  1:2419763/1‑99 (MQ=16)
                                                                                    aaCGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTg                >  1:311913/1‑100 (MQ=255)
                                                                                    aaCGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTg                <  2:201490/100‑1 (MQ=255)
                                                                                      cGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGaa              >  1:3288641/1‑100 (MQ=255)
                                                                                        ccTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACTGCGCCACTGGCGGATGCGGCGTGAACg            >  1:1140140/1‑100 (MQ=255)
                                                                                         cTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGc           <  1:1205153/100‑1 (MQ=255)
                                                                                          ttATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGcc          <  1:656179/100‑1 (MQ=255)
                                                                                          ttATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGcc          <  1:2735388/100‑1 (MQ=255)
                                                                                           tATCCGCCCTACCTGTGCACTCCCCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCt         <  2:3348762/100‑1 (MQ=255)
                                                                                           tATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGcc          <  1:1416196/99‑1 (MQ=255)
                                                                                            atccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCtt        >  2:419266‑M2/8‑100 (MQ=255)
                                                                                             tccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTa       <  2:3114086‑M2/94‑1 (MQ=255)
                                                                                             tccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTa       <  2:2637406‑M2/94‑1 (MQ=255)
                                                                                                gccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATcc    <  2:1740179‑M2/97‑1 (MQ=255)
                                                                                                  cCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGc  <  1:443583‑M2/99‑1 (MQ=255)
                                                                                                  cCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGc  <  1:1493005‑M2/99‑1 (MQ=255)
                                                                                                   |                                                                                                   
TCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC  >  NC_000913/3231183‑3231380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.