BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 138793	NA (NA)	9 (0.080)	7/170	NT	NA	noncoding (95/98 nt)	RIP10 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP10 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	740981 =	NA (NA)	9 (0.080)	7/170	NT	NA	noncoding (28/106 nt)	RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 147 total aligned reads displayed.

TACAAACGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGA  >  NC_000913/740882‑741080

tACAAACGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCa                                                                                                     <  1:2014629/100‑1 (MQ=255)

tACAAACGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCa                                                                                                     <  2:3172989/100‑1 (MQ=255)

 aCAAACGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAg                                                                                                    <  2:1762569/100‑1 (MQ=255)

 aCAAACGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAg                                                                                                    <  1:2740697/100‑1 (MQ=255)

 aCAAACGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAg                                                                                                    <  2:2541469/100‑1 (MQ=255)

  cAAACGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGc                                                                                                   >  1:223032/1‑100 (MQ=255)

   aaaCGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGcc                                                                                                  <  1:1948470/100‑1 (MQ=255)

   aaaCGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGcc                                                                                                  <  1:18146/100‑1 (MQ=255)

    aaCGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCt                                                                                                 >  1:1130546/1‑100 (MQ=255)

    aaCGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCt                                                                                                 >  1:824746/1‑100 (MQ=255)

    aaCGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCt                                                                                                 <  2:2155953/100‑1 (MQ=255)

      ctgatgcgctacgcttatcaggcctacgctagctgtgcaatccattgattttgcacaattttgtaggctggatgcggcgtgaacgccttatccAGCCTAc                                                                                               <  1:2155033‑M2/7‑1 (MQ=255)

        ttGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACaa                                                                                             <  1:77189/100‑1 (MQ=255)

           gCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAAtt                                                                                          >  1:1013568/1‑100 (MQ=255)

           gCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAAtt                                                                                          <  1:1390085/100‑1 (MQ=255)

           gCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAAtt                                                                                          >  1:399837/1‑100 (MQ=255)

             aGCGTATGAGGCGTCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTtg                                                                                        <  2:1986754/100‑1 (MQ=255)

             aGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTtg                                                                                        <  2:685863/100‑1 (MQ=255)

              gCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTtgt                                                                                       <  2:2621164/100‑1 (MQ=255)

              gCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTtgt                                                                                       <  1:2164656/100‑1 (MQ=255)

               cGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTtgtg                                                                                      <  1:2626001/100‑1 (MQ=255)

                gTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGc                                                                                     <  2:2397287/100‑1 (MQ=255)

                 tATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATCTGTGCa                                                                                    >  1:1399374/1‑100 (MQ=255)

                     aGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAAtt                                                                                <  2:843177/100‑1 (MQ=255)

                       gcggcgCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCa                                                                              <  1:3063140/100‑1 (MQ=255)

                          gcgcGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAAt                                                                            <  2:1353511/99‑1 (MQ=255)

                           cgcgGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATaa                                                                          <  1:2878875/100‑1 (MQ=255)

                            gcgGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATaaa                                                                         <  1:3136187/100‑1 (MQ=255)

                             cgGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAAt                                                                        >  2:2868022/1‑100 (MQ=255)

                              ggAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAAtt                                                                       <  2:3375719/100‑1 (MQ=255)

                              ggAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAAtt                                                                       <  1:1487922/100‑1 (MQ=255)

                                aaGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGc                                                                     <  2:2196542/100‑1 (MQ=255)

                                 aGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCa                                                                    >  2:419328/1‑100 (MQ=255)

                                 aGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCa                                                                    <  1:2005394/100‑1 (MQ=255)

                                  ggggAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAg                                                                   <  1:1192488/100‑1 (MQ=255)

                                   gggAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAgg                                                                  >  2:284050/1‑100 (MQ=255)

                                     gAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGaa                                                                >  2:249306/1‑100 (MQ=255)

                                       aaTAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAAt                                                              >  1:703444/1‑100 (MQ=255)

                                       aaTAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAAt                                                              <  2:1242892/100‑1 (MQ=255)

                                              gACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAgg                                                       <  2:1694529/100‑1 (MQ=255)

                                              gACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAgg                                                       >  1:2517307/1‑100 (MQ=255)

                                                  cgTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTg                                                   >  2:1584038/1‑100 (MQ=255)

                                                  cgTCAGGCAATCGAGCCCAGATGCCGAATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTg                                                   >  2:2084524/1‑100 (MQ=255)

                                                    tCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGAt                                                 >  1:2621944/1‑100 (MQ=255)

                                                     cAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATa                                                <  2:187044/100‑1 (MQ=255)

                                                     cAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATa                                                >  2:1309722/1‑100 (MQ=255)

                                                      aGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATaa                                               >  1:3184695/1‑100 (MQ=255)

                                                      aGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATaa                                               >  1:2271470/1‑100 (MQ=255)

                                                      aGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATaa                                               >  2:1263137/1‑100 (MQ=255)

                                                          aaTCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGAcg                                           <  1:361346/100‑1 (MQ=255)

                                                           aTCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGAcgc                                          <  2:2044739/100‑1 (MQ=255)

                                                            tCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGAcgcg                                         <  2:2130825/100‑1 (MQ=255)

                                                            tCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGAcgcg                                         <  2:2142642/100‑1 (MQ=255)

                                                             cGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGt                                        <  2:1287219/100‑1 (MQ=255)

                                                              gAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTc                                       >  2:1969985/1‑100 (MQ=255)

                                                              gAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTc                                       <  2:877449/100‑1 (MQ=255)

                                                              gAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTc                                       >  1:1813082/1‑100 (MQ=255)

                                                              gAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTc                                       >  1:2952105/1‑100 (MQ=255)

                                                               aGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTc                                       <  1:12308/99‑1 (MQ=255)

                                                               aGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCa                                      <  2:3366682/100‑1 (MQ=255)

                                                                gCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCaa                                     >  2:1696438/1‑100 (MQ=255)

                                                                 tttgtaggctggataaggcgttcacgccgcatccAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAg                                    >  1:2029055‑M2/35‑100 (MQ=255)

                                                                 cccAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTc                                       <  1:2991300/97‑1 (MQ=255)

                                                                 cccAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCaa                                     >  1:774633/1‑99 (MQ=255)

                                                                 cccAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAg                                    >  2:2586274/1‑100 (MQ=255)

                                                                 cccAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAg                                    <  2:2273657/100‑1 (MQ=255)

                                                                  ccAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGc                                   <  2:410233/100‑1 (MQ=255)

                                                                  caaGATGCCTGCTGCCGCGTTAACGCCTTAGCCAGCCTACAAATTTGTGCAAATCCAATCAGTTGCAGGAAAGACGTAGTCTTGCTAAGGCCCGTc                                       <  1:2036412/94‑1 (MQ=12)

                                                                     gATGCCGGATGCGGCGGGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTc                                <  1:986633/100‑1 (MQ=255)

                                                                      aggctggataaggcgttcacgccgcatccAGCCTACAAATTTGTGCAACTTCAATAGATTGCAGGAAATACGTACGCCTGCTAACACGCGTCAACCGTc                                >  1:129336‑M2/30‑99 (MQ=255)

                                                                      aTGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCg                               <  2:2159651/100‑1 (MQ=255)

                                                                        gCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCa                             <  1:3266791/100‑1 (MQ=255)

                                                                         ccGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCAt                            <  2:2193562/100‑1 (MQ=255)

                                                                           ggataaggcgttcacgccgcatccAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCa                          >  2:2354749‑M2/25‑100 (MQ=255)

                                                                           ggATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCa                          >  1:244199/1‑100 (MQ=255)

                                                                            gataaggcgttcacgccgcatccAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAg                         >  1:789680‑M2/24‑100 (MQ=255)

                                                                            gATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAg                         <  2:3013899/100‑1 (MQ=255)

                                                                             aTGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAgg                        <  1:1728207/100‑1 (MQ=255)

                                                                              tGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATGCGACGCTTGACGCGTCTGATCAGGc                       <  2:3040123/100‑1 (MQ=17)

                                                                              tGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGc                       <  1:2474088/100‑1 (MQ=255)

                                                                                cggcgTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCAt                     >  2:3220104/1‑100 (MQ=255)

                                                                                 ggcgTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATc                    <  2:2778783/100‑1 (MQ=255)

                                                                                 ggcgTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATc                    >  1:1582417/1‑100 (MQ=255)

                                                                                      gAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCgg                  <  1:57300/97‑1 (MQ=255)

                                                                                         cGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTgg            >  1:2341744/1‑100 (MQ=255)

                                                                                         cGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTgg            <  1:881676/100‑1 (MQ=255)

                                                                                         cGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTgg            <  2:1762002/100‑1 (MQ=255)

                                                                                         cGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTgg            <  1:2945732/100‑1 (MQ=255)

                                                                                         cGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTgg            <  1:3220086/100‑1 (MQ=255)

                                                                                         cGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCATGATAAGACGCGTCAAGCGTCGCATAAGGCATCGGTGCTgg            >  1:2729878/1‑100 (MQ=255)

                                                                                           ccTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGcc          <  1:1948416/100‑1 (MQ=255)

                                                                                            cTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCt         >  1:1711421/1‑100 (MQ=255)

                                                                                             ttATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTa        <  2:199544/100‑1 (MQ=255)

                                                                                               atccAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTAtt      <  2:1477490‑M2/96‑1 (MQ=255)

                                                                                               atccAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTAtt      <  2:244201‑M2/96‑1 (MQ=255)

                                                                                                tccAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTa     >  2:528811‑M2/4‑100 (MQ=255)

                                                                                                 ccAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTaa    <  1:1972190‑M2/98‑1 (MQ=255)

                                                                                                 ccAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTaa    <  2:1836557‑M2/98‑1 (MQ=255)

                                                                                                 ccAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTaa    >  2:1336157‑M2/3‑100 (MQ=255)

                                                                                                  cAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAg   <  1:817171‑M2/99‑1 (MQ=255)

TACAAACGTTGGCAGCGTATGAGGCGGCGCGGAAGGGGAAATAACAGACGCGTCAGGCAATCGAGCCCAGATGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGA  >  NC_000913/740882‑741080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.