New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 3937249 = | 151 (1.070) | 8 (0.060) | 8/196 | 19.3 | 5.1% | intergenic (+81/‑45) | rbsB/rbsK | D‑ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor/ribokinase |
? | NC_000913 | 3937276 = | 148 (1.060) | intergenic (+108/‑18) | rbsB/rbsK | D‑ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor/ribokinase | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below cutoff threshold. |
GAATGTGGTCAGCATTAATGCTGCCAAGAACAACGAGGCTGCCTGCGTTTTGCATATTCGGGATGTCCATAAAATGCGCCACCGTGTTAGGGTGGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3937348‑3937249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTTATGGACATCCCGAATATGCAAAACGCAGGCAGCCTCGTTGTTCTTGGCAGCATTAATGCTGACCACATTCTTAA > NC_000913/3937276‑3937352 GAATGTGGTCAGCATTAATGCTGCCAAGAACAACGAGGCTGCCTGCGTTTTGCATATTCGGGATGTCCATAAAATGCTCCACCGTGTTAGGGTGGCGCGT > 1:2385916/1‑100 AACAACGAGGCTGCCTGCGTTTTGCATATTCGGGATGTCCATAAAATGCGCCACCGTGTTAGGGTGGCGCGTTTTATGGACATCCCGAATATGCAAAA > 2:2059887/1‑98 CAACGAGGCTGCCTGCGTTTTGCATATTCGGGATGTCCATAAAATGCGCCACCGTGTTAGGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACGCA > 1:2539970/1‑100 CATATTCGGGATGTCCATAAAATGCGCCACCGTGTTAGGGTGGCGCGTTTTATGGACATCCCGAATATGCAAAACGCAGGCAGCCTCGTTGTTCTTGGCA > 2:1471442/1‑100 TAAAATGCGCCACCGTGTTAGGGTGGCGCGTTTTATGGACATCCCGAATATGCAAAACGCAGGCAGCCTCGTTGTTCTTGGCAGCATTAATGCTGACCAC > 1:2278143/1‑100 AAATGCGCCACCGTGTTAGGGTGGCGCGTTTTATGGACATCCCGAATATGCAAAACGCAGGCAGCCTCGTTGTTCTTGGCAGCATTAATGCTGACCACAT > 2:2983852/1‑100 AATGCGCCACCGTGTTAGGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACGCAGGCAGCCTCGTTGTTCTTGGCAGCATTAATGCTGACCACATT > 1:1858820/1‑100 CGCCACCGTGTTAGGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACGCAGGCAGCCTCGTTGTTCTTGGCAGCATTAATGCTGACCACATTCTTA > 2:1896535/1‑100 GCCACCGTGTTAGGGTGGCGCGTTTTATGGACATCCCGAATATGCAAAACGCAGGCAGCCTCGTTGTTCTTGGCAGCATTAATGCTGACCACATTCTTAA < 1:2983832/100‑1 GAATGTGGTCAGCATTAATGCTGCCAAGAACAACGAGGCTGCCTGCGTTTTGCATATTCGGGATGTCCATAAAATGCGCCACCGTGTTAGGGTGGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3937348‑3937249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTTATGGACATCCCGAATATGCAAAACGCAGGCAGCCTCGTTGTTCTTGGCAGCATTAATGCTGACCACATTCTTAA > NC_000913/3937276‑3937352 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |