| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 277679 = | NA (NA) | 6 (0.050) | 7/164 | NT | NA | noncoding (5/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 277704 = | NA (NA) | noncoding (30/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/277784‑277679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAA > NC_000913/277704‑277802 GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTA > 2:2987708/1‑100GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTA < 2:2474840/100‑1GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTA < 2:2035413/100‑1GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTA < 1:2000496/100‑1GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTA > 2:1378978/1‑100GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTA > 1:3165928/1‑100 CATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTAT > 2:637649/1‑100 CATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTAT > 2:47084/1‑100 CATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTAT > 2:2013495/1‑100 CATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTAT > 2:1959260/1‑100 ATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGTATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATC < 2:776881/100‑1 TGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCA > 1:136172/1‑100 TGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCA > 1:1595051/1‑100 TGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCA > 2:2640704/1‑100 TGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCA > 2:143343/1‑100 GTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAG > 1:3515428/1‑100 GTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAG > 2:2052693/1‑100 GTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAG > 1:1840693/1‑100 GTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAG > 2:3043008/1‑100 GTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAG < 2:3026277/100‑1 GTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCA < 1:2506195/99‑1 TTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAGG < 2:3176556/100‑1 TTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAGGC > 2:2442711/1‑100 TCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTG < 1:3161832/100‑1 CTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGC < 2:308321/100‑1 GGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCG < 2:3705910/100‑1 AACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAG < 1:2557671/100‑1 ctAATGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAG < 2:1188544/98‑1 CAATGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGAATCCGCCAGA > 1:782328/1‑100 AATGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAg > 1:1188533/1‑99 ATGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGCCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAAC > 1:2386557/1‑100 ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGA > 2:3631296/1‑100 TCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGAT > 1:2225314/1‑100 TCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGAT < 2:3561262/100‑1 TCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGAT > 2:3780493/1‑100 CAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATT < 2:1187025/100‑1 CAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATT > 1:34160/1‑100 AGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTT > 2:1957401/1‑100 AGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTT < 1:2848771/100‑1 GGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTC < 1:149091/100‑1 GCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCA < 1:1563496/100‑1 GCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCA > 1:2445495/1‑100 CATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAA > 1:406991/1‑100 CATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAA > 1:406103/1‑100 GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/277784‑277679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAA > NC_000913/277704‑277802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |