New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 437119	NA (NA)	18 (0.140)	9/162	NT	NA	intergenic (+12/+42)	pgpA/yajO	phosphatidylglycerophosphatase A/2‑carboxybenzaldehyde reductase
	?	NC_000913	= 437152	NA (NA)					noncoding (33/37 nt)	REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences

ATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATgcctgatg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/437021‑437119 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAATCA  <  NC_000913/437152‑437046                                                                                                                                                                                                                ATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATG                                                                                                            <  2:1377748/100‑1  TGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGC                                                                                                           >  1:354380/1‑100   GATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCC                                                                                                          <  2:3452559/100‑1   GATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCC                                                                                                          >  2:2128039/1‑100     TCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTG                                                                                                        <  2:3669103/100‑1      CGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGA                                                                                                       >  2:2162562/1‑100       nACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGAT                                                                                                      >  2:732823/2‑100       GACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGAT                                                                                                      >  2:562904/1‑100         CGATACTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATG                                                                                                     <  2:1435421/99‑1                          TGACTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGAT‑‑‑‑‑GTGACAAGCGTCACATCAG                                                                              <  1:2975409/100‑1                           GATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCT‑‑‑‑‑GACGTGACAAGCGTCACATCAGG                                                                             <  2:3362905/100‑1                             TTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATC                                                                                <  1:2646074/100‑1                               TCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAG                                                                              <  1:2879549/100‑1                               TCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAG                                                                              <  1:1546709/100‑1                                CCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGG                                                                             <  2:2493132/100‑1                                CCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGG                                                                             <  1:3361880/100‑1                                CCGCAGGCATCCTGTATTTTATCGGGCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAG                                                                              <  2:3068537/99‑1                                 CGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGC                                                                            <  2:3295260/100‑1                                 CGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGG                                                                             <  1:2505743/99‑1                                 CGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGG                                                                             <  1:2971982/99‑1                                 CGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTAACATCAGGC                                                                            <  1:2672371/100‑1                                  GCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCA                                                                           <  2:3328671/100‑1                                  GCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCA                                                                           <  2:2929705/100‑1                                   CAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCAT                                                                          <  1:459068/100‑1                                      GCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGG                                                                       <  1:3235360/100‑1                                           CTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCA                                                                   <  1:141709/99‑1                                              TATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAAC                                                               <  2:40964/100‑1                                                                                                     CCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGACTACCCAGCAGCCAGTGATGACCGACAAAATACCGGATGCGTGCGG        >  2:3477497/1‑100                                                                                                     CCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGG        >  2:304722/1‑100                                                                                                       TGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAA      >  2:2918425/1‑100                                                                                                       TGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAA      >  2:334807/1‑100                                                                                                        GATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAA     >  1:2562316/1‑100                                                                                                         ATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAAT    >  1:2442541/1‑100                                                                                                          TGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAATC   <  1:1730549/100‑1                                                                                                          TGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAATC   <  2:1958633/100‑1                                                                                                          TGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAACACAGGATGCCTGCGGAAATC   <  1:2350628/100‑1                                                                                                           GAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAATCA  <  2:3527125/100‑1                                                                                                           GAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAATCA  <  2:3530962/100‑1                                                                                                                                                                                                                ATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATgcctgatg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/437021‑437119 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAATCA  <  NC_000913/437152‑437046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.