| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2232736 = | NA (NA) | 8 (0.060) | 6/166 | NT | NA | noncoding (1/34 nt) | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2232766 = | NA (NA) | noncoding (31/34 nt) | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CTTTACCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2232839‑2232736‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTTAG > NC_000913/2232766‑2232863 CTTTACCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCATC < 2:794733/100‑1CTTTACCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCAT > 1:3312932/1‑99 TTTACCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCC < 2:3519487/100‑1 CCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCTTCCGGC < 1:3677840/99‑1 CTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACC > 2:3571170/1‑100 CTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACC > 2:1915755/1‑100 GGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAG > 2:3837183/1‑100 GCAAGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGC > 1:1203739/1‑100 CAAGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCG > 1:206528/1‑100 CAAGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCG > 1:2917478/1‑100 AAGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAACACCAGCGG > 1:438996/1‑100 AGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGG > 1:514988/1‑100 TCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCC < 1:3593514/100‑1 TCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCC < 1:3808945/100‑1 TCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCC < 2:3350251/100‑1 TCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCC < 2:3317845/100‑1 TCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCC < 2:3302303/100‑1 TCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATACCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCGGCGGGTAAAGTAGCCTGATGGAAATTTTCC > 1:2533127/1‑100 CCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCT < 2:1323695/100‑1 CCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCT > 1:2718194/1‑100 CCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCT < 2:2494158/100‑1 CGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTT > 1:3856733/1‑100 CGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTT > 1:1924950/1‑100 CGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTT > 1:843656/1‑100 CGGCTTGCCAGCCCTCTCCTGGTGTCGAAATACCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGGCTGATGGAAATTTTCCTT < 1:375088/100‑1 GGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTTA > 1:917051/1‑100 GGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTTA > 1:2759952/1‑100 GCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTTAG < 2:2857767/100‑1 GCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTTAG < 2:1150510/100‑1 GCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTTAG < 1:1478058/100‑1 CTTGCCAGCCCACTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCATCGGGTAAAGTGGCCTGATGGAAATTTTCCTTAG < 1:186810/99‑1 CTTTACCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2232839‑2232736‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTTAG > NC_000913/2232766‑2232863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |