New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2539674	NA (NA)	18 (0.140)	10/164	NT	NA	intergenic (‑91/+43)	cysM/cysA	cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit
	?	NC_000913	= 2539688	NA (NA)					intergenic (‑105/+29)	cysM/cysA	cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit

TTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2539569‑2539674 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggaGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGATA  <  NC_000913/2539688‑2539590                                                                                                                                                                                                               TTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAG                                                                                                           >  2:1763471/1‑100  TCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGC                                                                                                          >  1:1900392/1‑100  TCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGC                                                                                                          >  1:2429514/1‑100   CTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGACGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCC                                                                                                         >  1:1165543/1‑100    TAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCC                                                                                                        <  2:253940/100‑1     AATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCG                                                                                                       >  2:3666221/1‑100       TGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGA                                                                                                     <  1:1408956/100‑1       TGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGA                                                                                                     >  1:2974150/1‑100                            TACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGC                                                                                <  2:1244012/100‑1                            TACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGC                                                                                <  2:1239300/100‑1                             ACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCT                                                                               <  1:3578365/100‑1                               GTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTT                                                                             <  2:3631017/100‑1                               GTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTT                                                                             <  1:3134833/100‑1                               GTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCAGTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTT                                                                             <  1:2065284/100‑1                                 GGTGTTTCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTT                                                                           <  1:2729294/100‑1                                 GGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTT                                                                           <  1:256669/100‑1                                 GGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTT                                                                           <  2:2490291/100‑1                                 GGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGACATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTT                                                                           <  1:36799/100‑1                                    GTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAAT                                                                        <  1:216336/100‑1                                     TTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAACCCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATG                                                                       <  2:2100907/100‑1                                     TTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATG                                                                       <  2:2851662/100‑1                                      TGCCTGATGCTACGCTTGCGCGTCTTATCAGATCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGTCGCTTCCCGCGATCCGGGCTTTTTAATGG                                                                      <  2:2695134/100‑1                                      TGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGG                                                                      <  2:19173/100‑1                                           GATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGG                                                                 <  2:2974172/100‑1                                                          CGTGTTATCAGGGCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAGGCGCTTCCCGCGATTCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAG                                                   <  1:1441079/99‑1                                                            TCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAACGCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACC                                                <  2:1451365/100‑1                                                                                                    GCCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTA        <  2:655779/100‑1                                                                                                     CCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTAT       >  2:2701060/1‑100                                                                                                     CCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTAT       >  1:472020/1‑100                                                                                                     CCCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGAAAGGTTTGTAACCTGTAGACCTGATAAGGCGCGCAAGCGCCGCATCAGGCAACACCACGTct       >  1:1295095/1‑98                                                                                                      CCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATG      <  2:3083134/100‑1                                                                                                      CCGGAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATG      <  1:1519270/100‑1                                                                                                         GAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGAT   <  2:1190675/100‑1                                                                                                         GAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGAT   <  2:3369469/100‑1                                                                                                         GAGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGAT   <  1:3404647/100‑1                                                                                                          AGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGATA  >  2:2399537/1‑100                                                                                                          AGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGATA  <  2:231155/100‑1                                                                                                          AGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGATA  <  2:3854277/100‑1                                                                                                                                                                                                               TTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2539569‑2539674 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggaGGCGCTTCCCGCGATCCGGGCTTTTTAATGGCAAGGTTTGTAACCTGTAGACCTGATAAGACGCGCAAGCGTCGCATCAGGCAACACCACGTATGGATA  <  NC_000913/2539688‑2539590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.