New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 271027451 (0.370)74 (0.540) 57/176 NT 61.1% intergenic (‑262/‑146) rpoE/nadB RNA polymerase sigma E factor/quinolinate synthase, L‑aspartate oxidase (B protein) subunit
?NC_000913 = 3595644 44 (0.320)coding (760/927 nt) livH branched‑chain amino acid ABC transporter permease

TATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2710175‑2710274
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATATAAAGATGTGGTCTCATT  <  NC_000913/3595644‑3595550
                                                                                                                                                                                                   
TATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATC                                                                                                 >  1:1684890/1‑100
       CTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGG                                                                                          <  2:3653698/100‑1
        TACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGG                                                                                         <  2:951565/100‑1
        TACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGG                                                                                         >  2:861920/1‑100
        TACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGG                                                                                         <  1:1186422/100‑1
         ACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGA                                                                                        >  2:645014/1‑100
         ACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGA                                                                                        <  1:3431535/100‑1
          CAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTGACCACCTAATCATTCCGGGAG                                                                                       >  1:2837840/1‑100
          CAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAG                                                                                       <  2:3703597/100‑1
             AATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGA                                                                                    >  1:155908/1‑100
             AATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCG                                                                                     >  2:3453362/1‑99
              ATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGAT                                                                                   >  1:1289747/1‑100
               TCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATG                                                                                  >  2:92111/1‑100
                 TGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGAT                                                                                <  1:3348535/100‑1
                  GAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATT                                                                               >  1:571067/1‑100
                     CATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGC                                                                            <  1:536263/100‑1
                      ATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCG                                                                           >  1:1796228/1‑100
                        CGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGC                                                                         <  2:3092919/100‑1
                         GCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCC                                                                        <  1:480708/100‑1
                         GCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCC                                                                        <  1:3547416/100‑1
                           ATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTG                                                                      >  1:1302450/1‑100
                           ATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTG                                                                      <  2:3359284/100‑1
                             TATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCCGAT                                                                    >  1:1701466/1‑100
                               TCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTC                                                                  <  2:2802641/100‑1
                                 TGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTG                                                                <  2:3028880/100‑1
                                 TGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTG                                                                >  2:2284807/1‑100
                                  GTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGG                                                               >  1:3238982/1‑100
                                   TGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGG                                                              <  1:2938244/100‑1
                                    GTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAGCGGCCTTTTTATTTCACCACCTGGTCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGG                                                              <  1:3378397/99‑1
                                    GTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGG                                                             <  2:155912/100‑1
                                    GTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGG                                                              <  2:1655837/99‑1
                                     TAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGA                                                            >  2:2326252/1‑100
                                      AGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATAATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGAT                                                           >  1:3679329/1‑100
                                       GAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATT                                                          >  2:2648997/1‑100
                                       GAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATT                                                          >  2:3133994/1‑100
                                          ATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATGTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGC                                                        <  1:3114215/99‑1
                                           TGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGG                                                      <  2:1634069/100‑1
                                           TGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGG                                                      <  1:2648976/100‑1
                                             CCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAG                                                    >  2:2664148/1‑100
                                              CCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGG                                                   <  1:1962238/100‑1
                                              CCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGG                                                   <  1:2938581/100‑1
                                                     ACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTC                                            <  2:1686326/100‑1
                                                     ACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTC                                            >  1:2196523/1‑100
                                                      CTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCT                                           <  1:1017838/100‑1
                                                       TGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTT                                          >  2:2372065/1‑100
                                                        GCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTC                                         <  2:1289758/100‑1
                                                        GCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTC                                         >  2:3113872/1‑100
                                                        GCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTC                                         >  1:150842/1‑100
                                                        GCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTC                                         >  2:633778/1‑100
                                                          CTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTG                                       >  2:278468/1‑100
                                                          CTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTG                                       >  2:588541/1‑100
                                                          CTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGACCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCT                                        >  1:1200979/1‑99
                                                           TGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGn                                      <  1:1140983/100‑2
                                                            GAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCC                                     <  1:278463/100‑1
                                                            GAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCCCTCTCTTCTGCC                                     >  1:2285592/1‑100
                                                                AGTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATC                                 <  1:92109/100‑1
                                                                 GTAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCT                                >  1:471290/1‑100
                                                                  TAACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTG                               <  1:2548921/100‑1
                                                                    ACCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAG                             >  1:3111995/1‑100
                                                                     CCCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGT                            >  2:2775135/1‑100
                                                                      CCAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTA                           >  1:2774785/1‑100
                                                                       CAACGGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTAC                          >  2:501694/1‑100
                                                                           GGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAA                      <  2:3239006/100‑1
                                                                           GGCCTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGA                       >  1:57852/1‑99
                                                                              CTTTTTATTTTATTACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGATCGGAAagc                   >  1:3467033/1‑97
                                                                              CTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATAT                   >  2:1316674/1‑100
                                                                              CTTTTTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATAT                   >  1:3305394/1‑100
                                                                                  TTATTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATATAAAG               >  1:2287482/1‑100
                                                                                     TTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATATAAAGATG            >  1:3556303/1‑100
                                                                                     TTTCACCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATATAAAGATG            >  1:898839/1‑100
                                                                                          CCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATATAAAGATGTGGTC       >  1:2197392/1‑100
                                                                                          CCACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATATAAAGATGTGGTC       <  1:2972666/100‑1
                                                                                           CACCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATATAAAGATGTGGTCT      <  2:2752559/100‑1
                                                                                             CCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATATAAAGATGTGGTCTCA    <  2:189682/100‑1
                                                                                             CCTAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATATAAAGATGTGGTCTCA    <  1:2153958/100‑1
                                                                                               TAATCATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGCATATAAAGATGTGGTCTCATT  >  1:1018631/1‑100
                                                                                                                                                                                                   
TATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2710175‑2710274
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATTCCGGGAGCGATGATTGGCGGCCTGATTCTGGGGATTGCGGAGGCGCTCTCTTCTGCCTATCTGAGTACGGAATATAAAGATGTGGTCTCATT  <  NC_000913/3595644‑3595550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.