| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3216644 | NA (NA) | 10 (0.080) | 6/164 | NT | NA | noncoding (44/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3216674 | NA (NA) | noncoding (74/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
AATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3216547‑3216644‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTTGCA < NC_000913/3216674‑3216569 AATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGC > 1:2125608/1‑100 GATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGG > 2:48222/1‑100 ATTGTTAATCATGATAAATGCAAGCGATTTGTAGCACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGA < 1:1573435/100‑1 ATTGTTAATCATGATAAATGCAAGCGATTTGTAGAATTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGA < 2:1588605/100‑1 TTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGAT > 2:1375965/1‑100 TTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGAT < 2:3346609/100‑1 GCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGG < 1:3132018/100‑1 CGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:905647/100‑1 ATTTGTAGAACTGATATGTCTATATTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:904487/98‑1 ATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGT < 1:3627021/100‑1 ATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGT < 2:2260857/100‑1 ATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGT < 1:3396332/100‑1 TTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGTT < 2:1267140/100‑1 TTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGT < 2:2198327/99‑1 AGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTA < 1:1939954/100‑1 CTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAAT < 1:1220422/98‑1 ACGCCGGATGCGGCGTGAACGCCTTATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAAT > 2:2468851/1‑100 ACGCCGGATGCGGCGTGAACGCCTTATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAAT > 2:1231387/1‑100 GCCGGATGCGGCGTGAACGCCTTATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCG > 1:1164607/1‑100 GCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCG < 1:1220082/100‑1 CCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATC < 1:332773/98‑1 CCGGATAAGGCGTTCACGCCGCATCCGACGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGC > 1:896800/1‑100 CGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCT < 2:2918173/100‑1 GGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTT > 1:1242603/1‑100 GATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTTG > 2:1314290/1‑100 ATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTTGC < 2:1460378/100‑1 TAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTTGCA < 2:935362/100‑1 TAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTTGCA < 2:979610/100‑1 AATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3216547‑3216644‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGTTCACGCCGCATCCGGCGTTGAGTAATGATGCCTGAGAAGAGGCGGTTCGTCTTATCAGACTATAGACATATCAGTTCTACAAATCGCTTGCA < NC_000913/3216674‑3216569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |