New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3941661126 (0.910)25 (0.190) 10/166 NT 17.6% intergenic (‑334/‑147) yieP/rrsC putative transcriptional regulator/16S ribosomal RNA of rrnC operon
?NC_000913 = 4035360 NA (NA)intergenic (+207/‑171) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon

GGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3941557‑3941661
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggcGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCGT  <  NC_000913/4035360‑4035262
                                                                                                                                                                                                            
GGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAA                                                                                                          >  2:543848/1‑100
 GTTCTCCTGAGAACTGCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAG                                                                                                         <  1:3376479/100‑1
  TTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGC                                                                                                        <  1:3310770/100‑1
  TTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGC                                                                                                        <  2:2019858/100‑1
  TTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGC                                                                                                        <  1:1954976/100‑1
    cttCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGACGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGC                                                                                                        >  1:3384568/4‑98
    CTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGG                                                                                                      >  1:3459803/1‑100
     TCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGC                                                                                                     >  1:490872/1‑100
     TCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGC                                                                                                     <  1:655508/100‑1
     TCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGC                                                                                                     >  2:1349217/1‑100
      CCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGTGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGC                                                                                                     >  1:1763552/1‑99
       CTGAGATCTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGAAAAGCGTATTATGCACACCCCGCGCCTCTGAGAAAAAGCAAAGCGGC                                                                                                     <  1:2563484/98‑1
                                              CTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGC                                                            >  1:346926/1‑100
                                                                    ATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCC                                      >  2:2084965/1‑100
                                                                     TGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTTTTTTTTCTTCC                                      >  1:1524314/1‑99
                                                                       CACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGA                                   >  1:2201719/1‑100
                                                                           CCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATCCGCCTTCCCGCTAGAGAGGCAAGCATTTATTTTTGCTTTCTCTGCCGGAG                                  >  2:2462061/1‑97
                                                                           CCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTTTTTTCTTTTCCGtc                                   >  1:3012747/1‑94
                                                                           CCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTC                               >  2:2164793/1‑100
                                                                           CCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTC                               >  2:1548076/1‑100
                                                                           CCCCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTC                               >  2:1548358/1‑100
                                                                            CCCGCGCCGCTGAGAAAAAGCAAAGCGGCACGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCT                              >  2:139912/1‑100
                                                                             CCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCT                              >  2:1822617/1‑99
                                                                             CCGCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCAGGAGTTCT                              >  1:2931517/1‑99
                                                                              CGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCTCGCTACAGAGTCAAGCATTTATTTTTCTTTTATCTGCCGGAGTTCTCA                            >  2:91147/1‑100
                                                                              CGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA                            >  2:1287210/1‑100
                                                                              CGCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCA                            >  1:2259542/1‑100
                                                                               GCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCCGCCGGAGTTCTCAG                           >  2:1864531/1‑100
                                                                                CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATCATACGCCTTCCCGCCACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCCGAGCTTTCAG                           >  1:177945/1‑99
                                                                                CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGG                          >  1:2901055/1‑100
                                                                                CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGG                          >  1:95766/1‑100
                                                                                CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGCTCTCAGG                          >  2:2962989/1‑100
                                                                                CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTCCCGGAGTTCTCAGG                          >  1:103522/1‑100
                                                                                CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGGCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGG                          >  1:2102219/1‑100
                                                                                  CCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAG                        >  2:2874597/1‑100
                                                                                  CCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAG                        >  1:642668/1‑100
                                                                                    GCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAA                      >  2:3513409/1‑100
                                                                                                   AGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCACGCTGACCCGG        >  1:2270158/1‑99
                                                                                                    GCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCG      <  1:1098477/100‑1
                                                                                                    GCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGC       <  1:1187574/99‑1
                                                                                                     CGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGG     <  1:375377/100‑1
                                                                                                     CGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGG     <  2:3125782/100‑1
                                                                                                     CGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGG     <  2:777393/100‑1
                                                                                                     CGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCCCTGACCCGGCGG     <  2:2542951/100‑1
                                                                                                      GGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCAGAtcggaagag    >  1:1252099/1‑91
                                                                                                      GGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGC    <  1:819972/100‑1
                                                                                                       GCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG   <  1:459342/100‑1
                                                                                                       GCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG   <  1:3483958/100‑1
                                                                                                       GCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG   <  1:1549578/100‑1
                                                                                                       GCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG   <  2:3553252/100‑1
                                                                                                       GCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGG     <  2:2738796/98‑1
                                                                                                        CGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCGT  <  1:411222/100‑1
                                                                                                        CGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCGT  >  1:2804700/1‑100
                                                                                                        CGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGATCTCAGGAGAACCCCGCTGACCCGGCGGCG   >  1:3009201/1‑99
                                                                                                                                                                                                            
GGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3941557‑3941661
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggcGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCGT  <  NC_000913/4035360‑4035262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.