| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4571450 | 141 (1.020) | 16 (0.120) | 9/166 | NT | 10.9% | coding (125/1413 nt) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| ? | NC_000913 | = 4571464 | 131 (1.020) | coding (111/1413 nt) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4571346‑4571450‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacggCGTCAGTATCAGCACCGTGCAGCAGGCGTATCAGACGCTGGAGACGATGAAGCTCATCACTCCGCAGCCGCGTTCGGGTTATTTTGTCGCACAACGT < NC_000913/4571464‑4571368 GCGGTACTGGCGGCTGGGCTTTGCGGTGTGCGACAAAATAGCCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTG < 1:1811423/100‑1GCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTG < 2:217980/100‑1 CGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGC < 2:1428049/100‑1 CGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGC < 1:2273236/100‑1 CGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGC < 1:2722028/100‑1 GTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGTTGCAC < 2:3720263/100‑1 TACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACG < 1:1559979/100‑1 CTGGCGGCTGGGCTGTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGCGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCTTGCTGCA > 1:1044605/1‑96 GGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGT > 2:820181/1‑100 GTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTG < 1:1698367/100‑1 GTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGTGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAG < 1:2094900/100‑1 GTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAG < 2:1234624/100‑1 GTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAG < 2:61911/100‑1 GTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAG < 2:672764/100‑1 GTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCGTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAG < 1:2433415/100‑1 TGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAGC < 1:1584574/100‑1 TGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAGC < 1:1584573/100‑1 GCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAGCA < 1:758129/100‑1 CGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAGCAG < 2:3612918/100‑1 GACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAGCAGG < 1:2304587/100‑1 GACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAGCAGG < 1:1370974/100‑1 ACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAGCAGGC < 1:297434/100‑1 ACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAGCAGG < 2:2512621/99‑1 GAACGCGGCTGCGGAGTGATGAGCTTCATCGTCGCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTATCAGCACCGTGCAGCAGGCGTATCAGACGC < 1:1254512/99‑1 GATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGGCGTCAGTAGCAGCACCGTGCAGCAGGCGTATCAGACGCTGGAGACGATGAAGCTCA < 1:820174/100‑1 GCACGGCGTCAGTATCAGCACCGTGCAGCAGGCGTATCAGACGCTGGAGACGATGAAGCTCATCACTCCGCAGCCGCGTTCGGGTTATTTTGTCGCACAA > 2:1058798/1‑100 GCACGGCGTCAGTATCAGCACCGTGCAGCAGGCGTATCAGACGCTGGAGACGATGAAGCTCATCACTCCGCAGCCGCGGTCGGGTTATTTTGTCGCACA < 1:1788435/99‑1 ACGGCGTGAGTATCAGCACCGTGCAGCAGGCGTATCAGACGCTGGAGACGATGAAGCTCATCACTCCGCAGCCGCGTTCGGGTTATTTTGTCGCACAACG < 1:3086538/100‑1 ACGGCGTCAGTATCAGCACCGTGCAGCAGGCGTATCAGACGCTGGAGACGATGAAGCTCATCACTCCGCAGCCGCGTTCGGGTTATTTTGTCGCACAACG < 1:3086608/100‑1 CGGCGTCAGTATCAGCACCGTGCAGCAGGCGTATCAGACGCTGGAGACGATGAAGCTCATCACTCCGCAGCCGCGTTCGGGTTATTTTGTCGCACAACGT > 2:2439999/1‑100 GCGGTACTGGCGGCTGGGCTTTACGTTGTGCGACAAAATAACCCGAACGCGGCTGCGGAGTGATGAGCTTCATCGTCTCCAGCGTCTGATACGCCTGCTGCACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4571346‑4571450‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacggCGTCAGTATCAGCACCGTGCAGCAGGCGTATCAGACGCTGGAGACGATGAAGCTCATCACTCCGCAGCCGCGTTCGGGTTATTTTGTCGCACAACGT < NC_000913/4571464‑4571368 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |