| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4607047 | 158 (1.140) | 13 (0.100) | 7/168 | NT | 7.7% | coding (654/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 4607088 | 164 (1.260) | coding (613/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4606944‑4607047‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggc‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCGTCTCACCTTGTGCGATGTCTCTGCCCCGGCGGTAGAAGCCAGCCG < NC_000913/4607088‑4606991 TGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTT < 2:2418674/100‑1 GCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTC < 1:3698063/100‑1 GCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTC < 2:1651749/100‑1 GCTGGCAAAGACGTCACCTTCATCACCGTGGGCCGCGAGTGTTGCGCGGCTGTCTTCTACCGCCGGGTCAGAGACATCGCACAAGGTGAGACGAATTTTC < 1:1711422/100‑1 CTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACCTCGCACAAGGTGAGACGAATTTTCG > 2:947074/1‑100 CTGGCAAAGACTTCACCTTCAACACCGGTGGCCGCAAGTGTTGCGCGGCTGGCTCCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTC > 2:1921663/1‑99 TGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGG < 1:139541/100‑1 TGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGG > 1:562523/1‑100 TGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGG > 1:562658/1‑100 TGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCGGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGG < 1:3492915/100‑1 GGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC > 2:3517900/1‑100 GGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC > 2:783921/1‑100 GGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC > 2:1559909/1‑100 CAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC > 1:3735752/1‑98 GCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAA‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTC < 2:31592/100‑1 GCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAA‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTC < 1:2870966/100‑1 GGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCC < 2:2286200/100‑1 GGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCC < 1:1232133/100‑1 GCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAA‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCC < 2:2083395/100‑1 GCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC‑GAATGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCC < 1:721973/100‑1 CTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGA < 1:1009946/100‑1 TGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAA‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGA < 1:1269459/100‑1 CTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAAT < 1:845644/100‑1 tctCCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCG < 1:2430115/97‑1 CTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCG < 2:3582523/100‑1 TACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCGT < 1:2790514/100‑1 CCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCGaga > 2:2430133/1‑97 TCGGC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCGTCTCACCTTGTGCGATGTCTCTGCCCCGGCGGTAGAAGCCAG < 1:2002352/100‑1 CGGC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCGTCTCACCTTGTGCGATGTCTCTGCCCCGGCGGTAGAAGCCAGC > 1:1245177/1‑100 GGC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCGTCTCACCTTGTGCAATGTCTCTGCCCCGGCGGTAGAAGCCAGC > 1:788963/1‑99 GC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAACATTCGTCTCACCTTGTGCGATGTCTCTGCCCCGGCGGTAGAAGCCAGCCG > 1:182729/1‑100 GC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCGTCTCACCTTGTGCGATGTCTCTGCCCCGGCGGTAGAAGCCAGCCG < 2:1083262/100‑1 GC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCGTCTCACCTTGTGCGATGTCTCTGCCCCGGCGGTAGAAGCCAGCCG > 2:1305610/1‑100 GC‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCGTCTCACCTTGTGCGATGTCTCTGCCCCGGCGGTAGAAGCCAGCCG > 1:149241/1‑100 TGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4606944‑4607047‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggc‑TG‑TGGCGCGGGCGTGCTTTCAGTTGCCTTTGCGCGCCATTCGCCGAAAATTCGTCTCACCTTGTGCGATGTCTCTGCCCCGGCGGTAGAAGCCAGCCG < NC_000913/4607088‑4606991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |