| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4035244 | 37 (0.270) | 7 (0.050) | 7/168 | NT | 16.7% | intergenic (+91/‑287) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4035271 | NA (NA) | intergenic (+118/‑260) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
CTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCG > NC_000913/4035145‑4035343 | cTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAC > 2:3459490‑M1/1‑100 (MQ=255)cTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAC < 1:3490750‑M1/100‑1 (MQ=255) tGAAATCAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTACTCGTGACAGGCCGGAGTAAATAACTATAATGCGCCACGACTGgca > 1:1230189/1‑100 (MQ=17) tGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGaca > 2:436671/1‑100 (MQ=255) tGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGaca < 2:1954486/100‑1 (MQ=255) tGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGaca > 1:2164777/1‑100 (MQ=255) gAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGacac < 2:628815/100‑1 (MQ=255) gAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGacac > 2:1477914/1‑100 (MQ=255) aaaTAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACg > 1:2260218/1‑100 (MQ=255) aaaTAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACg > 1:1621592/1‑100 (MQ=255) aaTAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACgg < 2:1099237/100‑1 (MQ=255) aTAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggc > 1:473907‑M1/1‑95 (MQ=255) aTAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACg < 1:2992741/98‑1 (MQ=255) aTAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGa < 1:436665/100‑1 (MQ=255) tAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaa > 2:2201735/1‑100 (MQ=255) tAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaa < 2:3204438/100‑1 (MQ=255) aaGCATACAGAATAAAAAATGCGCGGTCAGAAGATTATGTTAAATCTCCTCTTGTCAGGCCGGCATAAAACGCTATAATGCGCAATCCGTGAGACGGaac > 1:2611736/1‑100 (MQ=9) aaGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaac < 1:440920/100‑1 (MQ=255) aaGCATAAAGAATAAAAAATGCGCCGTCAGAAAATTATTTTAAATTTCCTCTTGACAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaac < 2:1974334/100‑1 (MQ=255) aGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaaca < 2:1327318/100‑1 (MQ=255) aGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaaca > 2:3421123/1‑100 (MQ=255) cATAAAGCATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaac < 2:2549546/100‑1 (MQ=38) cATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaac < 2:3706647/100‑1 (MQ=40) aTAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACg > 1:3635993/1‑100 (MQ=40) aTAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACg > 1:15234/1‑100 (MQ=40) tAAAGGATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACgg < 1:1885876/100‑1 (MQ=25) tAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCTCCACTGACACGGAACAACgg < 1:2366188/100‑1 (MQ=255) aaaGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc > 2:3733262/1‑100 (MQ=38) aaaGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc > 2:2455537/1‑100 (MQ=38) aaaGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc < 1:3164394/100‑1 (MQ=38) aaaGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc > 1:1287199/1‑100 (MQ=38) aaaGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc > 1:61523/1‑100 (MQ=38) aaaGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc > 2:3458869/1‑100 (MQ=38) aaaGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc > 1:712173/1‑100 (MQ=38) aaaGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc > 1:2019033/1‑100 (MQ=38) aaaGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc < 2:1062729/100‑1 (MQ=38) caGAATAAAAAATGCGCGGTCAGAATAGTATTTTAAATGTCCTCCTGTCAGGCCTGAATACCGCCCTATAAAGCGCCACCACTGACACGGAACAACgtc < 1:3643044/98‑3 (MQ=11) ataaTAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaa < 1:2344784/98‑1 (MQ=17) aGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaa > 1:2755574/1‑100 (MQ=35) aGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaa > 2:449530/1‑100 (MQ=35) gAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaaa > 1:1548345/1‑100 (MQ=33) gAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaaa > 1:1548063/1‑100 (MQ=33) gAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaaa > 1:3692820/1‑100 (MQ=33) aaTAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 2:3054545/100‑1 (MQ=32) aaTAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 2:2812946/100‑1 (MQ=32) aaTAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 2:409597/100‑1 (MQ=32) aaTAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 2:2747741/100‑1 (MQ=32) ntAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAaca > 2:1960632/2‑100 (MQ=11) tAAAAAATGCGCGGTCAGCACCTTATTTTAAATCTCCCCCTATCCCGCCCGACCAACTCCCTACATTGAGCCCCAACTGACCAGGCACAACGGCacacac < 1:3215493/100‑1 (MQ=2) tAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAacac > 1:2884048/1‑100 (MQ=11) tAAAAAATGCGCGGTCAGAAAATTATTTTAAATATCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAacac > 1:2531891/1‑100 (MQ=11) cgGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtc < 2:931149‑M1/100‑31 (MQ=255) ggTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCGCTGACccggcggcgtgtttgccgttgttccgtgtca < 1:3423657‑M1/100‑32 (MQ=255) gTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcag < 1:786917‑M1/100‑33 (MQ=255) tCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagt < 2:473914‑M1/100‑34 (MQ=255) cAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtg < 1:2501000‑M1/100‑35 (MQ=255) aGAAAATTATTTTAAATTGCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtggttgccgttgttccgtgtcagtgg < 1:527123‑M1/100‑36 (MQ=255) gAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATATTGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggt < 1:3290259‑M1/100‑37 (MQ=255) cTGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgac < 2:1346069‑M1/100‑96 (MQ=255) tGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgacc < 2:3162876‑M1/100‑97 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg < 2:1015887‑M1/100‑98 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:2107015‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 1:1245543‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 1:1592012‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 1:79899‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:2819992‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:1713242‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:2106767‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:2258473‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgc > 1:2042900‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttatgaccgcg > 1:624773‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcacattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 1:2173167‑M1/1‑1 (MQ=255) | CTGAAATAAGCATAAAGAATAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCG > NC_000913/4035145‑4035343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |