New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4415961NA (NA)10 (0.080) 6/166 NT NA noncoding (4/34 nt) REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4415991 NA (NA)noncoding (34/34 nt) REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 185 total aligned reads displayed.

TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACC  >  NC_000913/4415892‑4416090
                                                                                                   |                                                                                                   
tgtgtgtAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGC                                                                                                     <  2:982007‑M2/100‑1 (MQ=255)
tgtgtgtAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGC                                                                                                     >  1:1788009‑M2/1‑100 (MQ=255)
tgtgtgtAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGC                                                                                                     <  2:323718‑M2/100‑1 (MQ=255)
  tgtgtAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCAt                                                                                                   <  2:2003775/100‑1 (MQ=255)
  tgtgtAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCAt                                                                                                   >  2:3515084/1‑100 (MQ=255)
  tgtgtAAGCGTATACGACTGATGCGACGCTGGTTTCGAGTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCAt                                                                                                   <  1:759776/100‑1 (MQ=255)
   gtgtAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGCCAAGGCGCTCGCGCCGCATCCGGCAtt                                                                                                  >  2:3319923/1‑100 (MQ=255)
   gtgtAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCAtt                                                                                                  >  2:2228872/1‑100 (MQ=255)
    tgtAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTg                                                                                                 >  2:1574136/1‑100 (MQ=255)
    tgtAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTg                                                                                                 <  2:2224764/100‑1 (MQ=255)
       aaGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTc                                                                                              <  2:3161231/100‑1 (MQ=255)
        aGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTCAATGAAATATGTGAAAATTCTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCa                                                                                             <  1:2100298/100‑1 (MQ=255)
        aGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCa                                                                                             <  2:2359061/100‑1 (MQ=255)
          cGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACGAGGCGCTCGCGCCGCATCCGGCATTGTTCAtt                                                                                           <  2:3656681/100‑1 (MQ=255)
          cGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCAtt                                                                                           <  1:2074801/100‑1 (MQ=255)
          cGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCCCCGCATCCGGCATTGTTCAt                                                                                            <  1:869351/99‑1 (MQ=255)
             ataCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGc                                                                                        >  2:629726/1‑100 (MQ=255)
              taCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCt                                                                                       >  1:3718815/1‑100 (MQ=255)
              taCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCt                                                                                       <  1:1993809/100‑1 (MQ=255)
              taCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTAGCGCCGCATCCGGCATTGTTCATTTGCt                                                                                       >  1:3544525/1‑100 (MQ=255)
               aCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTg                                                                                      <  2:1943444/100‑1 (MQ=255)
               aCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTg                                                                                      <  2:2719482/100‑1 (MQ=255)
                cGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGt                                                                                     >  1:2801397/1‑100 (MQ=255)
                cGACTGATGCGACGCTGGTTTCAATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGt                                                                                     >  1:2238811/1‑100 (MQ=255)
                  accgATGCGACGCTGGTTTCGATTAACTAAACGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTa                                                                                    <  1:1468260/96‑1 (MQ=255)
                   cTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGa                                                                                  >  2:3420706/1‑100 (MQ=255)
                    tGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGAt                                                                                 <  1:3586539/100‑1 (MQ=255)
                     gATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATg                                                                                <  1:287171/100‑1 (MQ=255)
                        gCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGaca                                                                             >  1:105530/1‑100 (MQ=255)
                         cGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGacac                                                                            >  2:1686193/1‑100 (MQ=255)
                            cGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCa                                                                         >  2:798555/1‑100 (MQ=255)
                            cGCTGGTTTCGATCAACTAAATGAAATATGTCAAAATTGTAGACCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCa                                                                         >  2:2602353/1‑100 (MQ=255)
                             gCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCAt                                                                        <  1:1435763/100‑1 (MQ=255)
                              cTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATg                                                                       <  1:3276943/100‑1 (MQ=255)
                              cTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATg                                                                       <  1:3305699/100‑1 (MQ=255)
                              cTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATg                                                                       <  1:935132/100‑1 (MQ=255)
                                ggTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCa                                                                     >  1:1637120/1‑100 (MQ=255)
                                ggTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCAATGTTCAGCTGCTGTAGATGACACTCCTGc                                                                      >  1:127553/1‑99 (MQ=38)
                                 gTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCAt                                                                    <  2:3041416/100‑1 (MQ=255)
                                     cGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAg                                                                <  1:1067035/100‑1 (MQ=255)
                                     cGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAg                                                                <  1:979673/100‑1 (MQ=255)
                                     cGATTAACTAAATCAAATATGTGAAAATTGTAGGCCTGACTAGCCGCTCGCGCCGCATACGGGATTGTACATTTGGTGTAGATGACACACCTGCATAc                                                                  >  1:1417452/1‑98 (MQ=255)
                                         tAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATc                                                            >  2:2362545/1‑100 (MQ=255)
                                         tAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATc                                                            >  1:1255726/1‑100 (MQ=255)
                                          aaCTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCg                                                           <  2:3098099/100‑1 (MQ=255)
                                          aaCTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCg                                                           >  2:956482/1‑100 (MQ=255)
                                            cTAAATGAAATATGTGAAAATTGTAGGCCGTACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGcc                                                         <  1:3379848/100‑1 (MQ=255)
                                            cTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGcc                                                         <  2:2618659/100‑1 (MQ=255)
                                            cTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGcc                                                         <  2:105532/100‑1 (MQ=255)
                                            cTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGcc                                                         <  2:1389032/100‑1 (MQ=255)
                                             taaattaaatATGGGAAAATTGTACGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCt                                                        <  2:1790084/100‑1 (MQ=255)
                                              aaaTGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTg                                                       >  1:1346658/1‑100 (MQ=255)
                                                aTGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTa                                                     >  1:1662294/1‑100 (MQ=255)
                                                    aaTATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTAcgcg                                                 <  1:3501069/100‑1 (MQ=255)
                                                        tgtgAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAg                                             <  2:1771621/100‑1 (MQ=255)
                                                        tgtgAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAg                                             >  2:924105/1‑100 (MQ=255)
                                                           gAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATGCGACATTGTTCATCTGCGGTAGATGACACACCTGCATCAAGTATAGCCTGAACGCGCCAGTTa                                          >  1:3012341/1‑100 (MQ=25)
                                                           gAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGAGACTCATGCATACAGTATCGCCTGTACGCGCCAGTTa                                          <  2:2716717/100‑1 (MQ=255)
                                                           gAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTa                                          >  2:3204338/1‑100 (MQ=255)
                                                           gAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTa                                          >  2:3615742/1‑100 (MQ=255)
                                                            aaaaTTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCctacaattttcacatatttcatttagttaatcgaaaccagcgtcgcatcagtcgtatgcg                                         <  2:1738439‑M2/100‑61 (MQ=255)
                                                             aaaTTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTAt                                         >  1:1399674/1‑99 (MQ=255)
                                                             aaaTTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATc                                        >  2:557066/1‑100 (MQ=255)
                                                              aaTTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCa                                       <  2:3479942/100‑1 (MQ=255)
                                                               aTTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCctacaatgttcacatatgtcatttagttaatcgaaaccagcgtcgcatcagtcgtatacgtct                                      <  1:3416559‑M2/100‑64 (MQ=255)
                                                               aTTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCan                                      <  2:1819057/100‑2 (MQ=255)
                                                               aTTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAg                                      >  1:563832/1‑100 (MQ=255)
                                                                ttGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAgg                                     <  2:1820260/100‑1 (MQ=255)
                                                                ttGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAgg                                     >  1:2463177/1‑100 (MQ=255)
                                                                 tGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgc                                    <  2:1131342/100‑1 (MQ=255)
                                                                   tAGGCCGGACAAGGCGCTCGCGCCGCATCCTGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgctg                                  <  1:1726782/100‑1 (MQ=255)
                                                                   tAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCctacaattttcacatatttcatttagttaatcgaaaccagcgtcgcatcagtcgtatacgcttacac                                  <  1:532871‑M2/100‑68 (MQ=255)
                                                                   tAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCctacaattttcacatatttcatttagttaatcgaaaccagcgtcgcatcagtcgtatacgcttacac                                  <  2:2100406‑M2/100‑68 (MQ=255)
                                                                   tAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgctg                                  <  2:563839/100‑1 (MQ=255)
                                                                    aGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCATTTATCAGgctgc                                 <  2:2527707/100‑1 (MQ=255)
                                                                     ggCCGGACAAGGCGCTCGCGCCGCATCCGGCctacaattttcacatatttcatttagttaatctaaacaagagtcgcatcagtcgtatacgcttacacac                                <  1:1562019‑M2/100‑70 (MQ=255)
                                                                     ggCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgctgct                                >  2:948013/1‑100 (MQ=255)
                                                                      gCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTGATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGctgctg                               >  1:3222334/1‑100 (MQ=255)
                                                                       ccGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTgg                              >  1:1439012/1‑100 (MQ=255)
                                                                         ggACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTc                            <  2:3466934/100‑1 (MQ=255)
                                                                          gACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCt                           >  2:476789/1‑100 (MQ=255)
                                                                            cAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTc                         <  1:662040/100‑1 (MQ=255)
                                                                            cAAGGCGCTCGCGCCGCATCCGACATTGTTCTTTTGCCGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTc                         <  1:2602333/100‑1 (MQ=255)
                                                                               ggCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTa                      >  1:217580/1‑100 (MQ=255)
                                                                               ggCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTa                      >  1:2363068/1‑100 (MQ=255)
                                                                               ggCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTa                      <  2:3600299/100‑1 (MQ=255)
                                                                               ggCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTa                      >  2:1394329/1‑100 (MQ=255)
                                                                                ttccgatctccgcATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTAc                     <  2:2884956/91‑1 (MQ=255)
                                                                                    tCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATgg                 <  1:2689962/100‑1 (MQ=255)
                                                                                     cgcgCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGt                <  1:1928889/100‑1 (MQ=255)
                                                                                      gcgcCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATg                  <  1:277400/97‑1 (MQ=255)
                                                                                       cgccgcATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGtaa              >  1:3805368/1‑100 (MQ=255)
                                                                                        gccgcATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGtaat             <  1:3122627/100‑1 (MQ=255)
                                                                                               ccGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCgg      <  2:700541/100‑1 (MQ=255)
                                                                                               ccGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCgg      <  2:1255737/100‑1 (MQ=255)
                                                                                                cGGCctacaattttcacatatttcatttagttaatcgaaaccagcgtcgcatcagtcgtatacgcttacacacacactccccccgtcgcccgcagcaata     >  2:1881495‑M2/1‑4 (MQ=255)
                                                                                                 ggCctacaattttcacatatttcatttagttaatcgaaaccagcgtcgcatcagtcgtatacgcttacacacacactccccccgtcgcccgcagcaataa    <  2:682796‑M2/100‑98 (MQ=255)
                                                                                                 ggCctacaattttcacatatttcatttagttaatcgaaaccagcgtcgcatcagtcgtatacgcttacacacacactccccccgtcgcccgcagcaata     >  1:3753544‑M2/1‑3 (MQ=255)
                                                                                                  gCATTGTTCATTTGCTGTAGATGACTCTCATGCATAGAGGATCGCCTGTACGCGCAAGTGATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTAc   <  1:1193730/100‑1 (MQ=255)
                                                                                                   cctacaattttcacatatttcatttagttaatcgaaaccagcgtcgcatcagtcgtatacgcttacacacacactccccccgtcgcccgcagcaataaat  >  2:1367899‑M2/1‑1 (MQ=255)
                                                                                                   |                                                                                                   
TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACC  >  NC_000913/4415892‑4416090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.