Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp 100% insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979275 1979278 4–776 181 [0] [0] 177 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)148 (1.180) 88/162 NT 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

Only 100 of 177 total aligned reads displayed.

AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT  >  NC_000913/1979182‑1979378
                                                                                                 |                                                                                                   
tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtat                                                                                                   >  2:493531‑M2/98‑100 (MQ=255)
  ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                 >  2:3550497‑M2/96‑100 (MQ=255)
    cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                               >  2:97348‑M2/94‑100 (MQ=255)
    cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                               <  1:898344‑M2/7‑1 (MQ=255)
      tcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                             <  1:588284‑M2/9‑1 (MQ=255)
       cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAt                                                                                            <  1:1283453‑M2/10‑1 (MQ=255)
       cactacacgcacagacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAt                                                                                            <  1:3724976‑M2/10‑1 (MQ=255)
        actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                           >  1:1134223‑M2/90‑100 (MQ=255)
        actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                           >  2:926384‑M2/90‑100 (MQ=255)
        actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                           >  2:284311‑M2/90‑100 (MQ=255)
        actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                           >  1:232199‑M2/90‑100 (MQ=255)
         ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                          <  1:454372‑M2/12‑1 (MQ=255)
            cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttt                                                                                       >  2:1376913‑M2/86‑100 (MQ=255)
              cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                     <  2:3738038‑M2/17‑1 (MQ=255)
              cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                     >  2:3544478‑M2/84‑100 (MQ=255)
              cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                     <  2:150387‑M2/17‑1 (MQ=255)
               gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                                                                    >  2:754522‑M2/83‑100 (MQ=255)
               gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                                                                    <  2:3819702‑M2/18‑1 (MQ=255)
                  catacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaccataaatgTATAAGTCATACttttgt                                                                                    >  1:3020716‑M2/80‑97 (MQ=255)
                  catacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtttt                                                                                 >  2:2091066‑M2/80‑100 (MQ=255)
                  aatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtatt                                                                                 >  1:946495‑M2/80‑100 (MQ=255)
                   atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttttg                                                                                <  2:2782630‑M2/22‑1 (MQ=255)
                   atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttttg                                                                                <  2:2471428‑M2/22‑1 (MQ=255)
                   atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttttg                                                                                <  2:1663892‑M2/22‑1 (MQ=255)
                   atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttttg                                                                                <  2:1134231‑M2/22‑1 (MQ=255)
                    tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                               <  1:3438895‑M2/23‑1 (MQ=255)
                     acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                              <  1:492594‑M2/24‑1 (MQ=255)
                     acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                              <  1:3673305‑M2/24‑1 (MQ=255)
                     acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                              <  2:715372‑M2/24‑1 (MQ=255)
                      caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                             >  2:1598033‑M2/76‑100 (MQ=255)
                       aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtg                                                                            >  1:3019414‑M2/75‑100 (MQ=255)
                         cggcggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcgattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTa                                                                          <  1:1487066‑M2/28‑1 (MQ=255)
                         cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTa                                                                          <  1:247749‑M2/28‑1 (MQ=255)
                                 ggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc                                                                  <  2:2531978‑M2/36‑1 (MQ=255)
                                  gctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                 >  2:144750‑M2/64‑100 (MQ=255)
                                      cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTGTGGGGGTATTGCAATCTGTTa                                                             >  2:3659447‑M2/60‑100 (MQ=255)
                                        attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                                           >  1:1852130‑M2/58‑100 (MQ=255)
                                        attttcaataatgcgtgatgaagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                                           <  1:2836591‑M2/43‑1 (MQ=255)
                                         ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                          <  2:3594923‑M2/44‑1 (MQ=255)
                                         ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                          <  2:2296268‑M2/44‑1 (MQ=255)
                                             caataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt                                                      <  2:3682018‑M2/48‑1 (MQ=255)
                                              aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                     >  2:2466172‑M2/52‑100 (MQ=255)
                                               ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTCTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                    >  1:2130057‑M2/51‑100 (MQ=255)
                                                 aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                  <  2:1785009‑M2/52‑1 (MQ=255)
                                                  atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                 >  2:797613‑M2/48‑100 (MQ=255)
                                                  atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                 <  1:3538903‑M2/53‑1 (MQ=255)
                                                  atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                 >  2:1812453‑M2/48‑100 (MQ=255)
                                                   cttccgatctagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                                                <  1:858041‑M2/54‑1 (MQ=255)
                                                       tgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg                                            <  1:2556243‑M2/58‑1 (MQ=255)
                                                          tgcagataacagaaaactctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                         <  1:1400184‑M2/61‑1 (MQ=255)
                                                           gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag                                        >  1:1918641‑M2/39‑100 (MQ=255)
                                                            cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                       >  1:3757614‑M2/38‑100 (MQ=255)
                                                            cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                       <  2:1846451‑M2/63‑1 (MQ=255)
                                                             agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                      <  1:2544865‑M2/64‑1 (MQ=255)
                                                              gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                     >  2:2594379‑M2/36‑100 (MQ=255)
                                                               atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag                                    <  2:860344‑M2/66‑1 (MQ=255)
                                                               atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                     >  1:1302133‑M2/35‑99 (MQ=255)
                                                                tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc                                   >  2:846680‑M2/34‑100 (MQ=255)
                                                                tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc                                   >  1:928789‑M2/34‑100 (MQ=255)
                                                                 cacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagca                                  <  2:1054577‑M2/68‑1 (MQ=255)
                                                                  acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                                 >  1:720690‑M2/32‑100 (MQ=255)
                                                                  acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                                 >  2:1003416‑M2/32‑100 (MQ=255)
                                                                   cacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaa                                >  1:3200144‑M2/31‑100 (MQ=255)
                                                                   cacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaa                                >  2:3488904‑M2/31‑100 (MQ=255)
                                                                     caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                              >  1:1637916‑M2/29‑100 (MQ=255)
                                                                     caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                              <  1:2475806‑M2/72‑1 (MQ=255)
                                                                     caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                              <  2:3185609‑M2/72‑1 (MQ=255)
                                                                      aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                             >  2:354620‑M2/28‑100 (MQ=255)
                                                                       aaacactcaattacttaacataaatgTATAAGTCATACTATTGTGTTGGTTGTATTTCAATCTGTGAAAAAGTTATTCGCTACGCTAGCAAGCAAAAATg                            >  1:2659747‑M2/27‑100 (MQ=255)
                                                                         ncactcaattacttaacataaatgTATAAGTCATACTTTTTTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa                           >  1:1420570‑M2/25‑99 (MQ=255)
                                                                         acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                          >  1:635888‑M2/25‑100 (MQ=255)
                                                                         acactcaattacttaacataaatgTATAAGACAAACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAATCAAAAATGaa                          >  1:2540756‑M2/25‑100 (MQ=255)
                                                                          cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                         >  2:1949912‑M2/24‑100 (MQ=255)
                                                                           actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                        <  1:3544452‑M2/78‑1 (MQ=255)
                                                                            ctcaattacttaacataaatgTGTAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                       >  1:2236290‑M2/22‑100 (MQ=255)
                                                                            ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTCAATCTGTTAAAAAGTTTGTCGCTACGCTAGCAAGCAAAAATGAAACa                       >  1:3267434‑M2/22‑100 (MQ=255)
                                                                            ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                       >  2:2204350‑M2/22‑100 (MQ=255)
                                                                             tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                      <  2:3018836‑M2/80‑1 (MQ=255)
                                                                              caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                     >  2:3419990‑M2/20‑100 (MQ=255)
                                                                              caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                     >  1:261471‑M2/20‑100 (MQ=255)
                                                                              caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                     >  2:3638097‑M2/20‑100 (MQ=255)
                                                                               aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                    >  2:510732‑M2/19‑100 (MQ=255)
                                                                                attacttaacagaaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaa                   <  1:1456180‑M2/83‑1 (MQ=255)
                                                                                 ttacttatcataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                     <  1:2860887‑M2/81‑1 (MQ=255)
                                                                                  tacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaata                 <  1:1391955‑M2/85‑1 (MQ=255)
                                                                                   acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa                >  2:2019511‑M2/15‑100 (MQ=255)
                                                                                    cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat               >  2:3025010‑M2/14‑100 (MQ=255)
                                                                                     ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc              <  1:822942‑M2/88‑1 (MQ=255)
                                                                                     ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc              <  2:2269495‑M2/88‑1 (MQ=255)
                                                                                      taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAGAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg             <  2:1229213‑M2/89‑1 (MQ=255)
                                                                                      taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg             >  1:3480317‑M2/12‑100 (MQ=255)
                                                                                      taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg             >  1:3321772‑M2/12‑100 (MQ=255)
                                                                                      taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg             >  2:1181511‑M2/12‑100 (MQ=255)
                                                                                      taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg             <  1:1230073‑M2/89‑1 (MQ=255)
                                                                                           taaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg        >  1:1010575‑M2/7‑100 (MQ=255)
                                                                                            aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAtgn       <  1:530063‑M2/95‑2 (MQ=255)
                                                                                             aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAACTggg      >  1:331440‑M2/5‑100 (MQ=255)
                                                                                             aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGATAGAAAGCAAAAATGAAACAGGAATAATCGAAATggg      <  1:1680130‑M2/96‑1 (MQ=255)
                                                                                               tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt    >  2:2856150‑M2/3‑100 (MQ=255)
                                                                                                 tataAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt  <  2:3095168/100‑1 (MQ=255)
                                                                                                 |                                                                                                   
AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT  >  NC_000913/1979182‑1979378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: