Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp 100% [rph]–[rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 167 [0] [0] 164 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)137 (1.120) 81/158 NT 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

Only 100 of 164 total aligned reads displayed.

AGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCT  >  NC_000913/3815844‑3816040
                                                                                                 |                                                                                                   
gtttaatgcctccgctcctcatcttactgttctacacacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGt                                                                                                   <  1:417474‑M2/3‑1 (MQ=255)
   tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                >  1:2148555‑M2/95‑100 (MQ=255)
    catgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcccc                                                                                               <  2:230281‑M2/7‑1 (MQ=255)
    catgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcccc                                                                                               >  2:2796586‑M2/94‑100 (MQ=255)
     atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgaCGTCCCCt                                                                                              >  1:2695807‑M2/93‑100 (MQ=255)
      tgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                             >  2:3719725‑M2/92‑100 (MQ=255)
        ccttagatcctcatcttactttgctacacacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccatcgccgccttctgcCGTcccc                                                                                               >  1:2245979‑M2/90‑96 (MQ=255)
         cttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCAc                                                                                          <  1:3296708‑M2/12‑1 (MQ=255)
            cgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTc                                                                                       <  2:1500256‑M2/15‑1 (MQ=255)
             gctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCa                                                                                      <  2:982604‑M2/16‑1 (MQ=255)
               tcctcctcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCCat                                                                                    <  2:2880296‑M2/18‑1 (MQ=255)
                  tcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                 >  1:2275319‑M2/80‑100 (MQ=255)
                   catcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTCCACTTCAatgatg                                                                                <  2:2619172‑M2/22‑1 (MQ=255)
                    atcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                               >  2:1637747‑M2/78‑100 (MQ=255)
                    atcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                               <  2:187153‑M2/23‑1 (MQ=255)
                      cttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcgc                                                                             <  2:236872‑M2/25‑1 (MQ=255)
                      cttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcgc                                                                             >  1:1505218‑M2/76‑100 (MQ=255)
                       ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccggcttctgcCGTCCCCTGCACTTCAATGATGCGcc                                                                            <  1:2309349‑M2/26‑1 (MQ=255)
                       ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCCTCCCCTGCACTTCAATGCTGCGcc                                                                            >  1:2305012‑M2/75‑100 (MQ=255)
                           ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTc                                                                        <  2:1826892‑M2/30‑1 (MQ=255)
                              tctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc                                                                     <  2:142424‑M2/33‑1 (MQ=255)
                              tctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc                                                                     <  2:839577‑M2/33‑1 (MQ=255)
                               tctacagacaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc                                                                     <  1:1276318‑M2/33‑1 (MQ=255)
                               ctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                    >  2:498650‑M2/67‑100 (MQ=255)
                               ctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                    >  2:509107‑M2/67‑100 (MQ=255)
                                tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                   <  2:1191855‑M2/35‑1 (MQ=255)
                                tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctacCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                   >  2:2702313‑M2/66‑100 (MQ=255)
                                 acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                  <  1:1959135‑M2/36‑1 (MQ=255)
                                 acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                  <  1:2662493‑M2/36‑1 (MQ=255)
                                  cagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc                                                                 >  1:1072675‑M2/64‑100 (MQ=255)
                                  cagacaaaaaaaaggcgactcatcagtcgcctcaaaaatgagattgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc                                                                 <  1:2705451‑M2/37‑1 (MQ=255)
                                  cagacaaaaaaaaggcgactcatcagtcgccctcacaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGCTGCGCCCGTCTTCGGt                                                                  >  1:1848991‑M2/64‑99 (MQ=255)
                                   agacaaaaaaaaggcgactcatcagtcgccttaacaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCTCCCGTCTTCGGtca                                                                >  2:3163508‑M2/63‑100 (MQ=255)
                                   agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                >  1:1838843‑M2/63‑100 (MQ=255)
                                   agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                <  2:2109043‑M2/38‑1 (MQ=255)
                                    gacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                                               >  2:3670852‑M2/62‑100 (MQ=255)
                                    gacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagagccgccttctgcCGTTCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                  <  1:1580483‑M2/36‑1 (MQ=255)
                                    gacaaaaaaaaggcgactcaacagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                                               >  1:2351882‑M2/62‑100 (MQ=255)
                                      caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATTCGCCCGTCTTCAGtca                                                                >  1:3770671‑M2/60‑97 (MQ=255)
                                      caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                             >  2:3245490‑M2/60‑100 (MQ=255)
                                      caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                             >  1:3626713‑M2/60‑100 (MQ=255)
                                      caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                             >  2:2065736‑M2/60‑100 (MQ=255)
                                      caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                             >  2:1366251‑M2/60‑100 (MQ=255)
                                      caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgacagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                             >  1:105629‑M2/60‑100 (MQ=255)
                                       aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                            <  2:2590639‑M2/42‑1 (MQ=255)
                                       aaaaaaaaggcgactcagcagtcgcgttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                <  1:3620684‑M2/38‑1 (MQ=255)
                                        aaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt                                                           >  2:2836816‑M2/58‑100 (MQ=255)
                                         ttttaaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATCCGCCCGTCTTCGGCCATCACTa                                                          >  2:1586582‑M2/57‑100 (MQ=255)
                                          aaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTAc                                                         >  1:737761‑M2/56‑100 (MQ=255)
                                            taaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGt                                                       >  1:2535643‑M2/54‑100 (MQ=255)
                                             aaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt                                                      <  1:150128‑M2/48‑1 (MQ=255)
                                              aggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                     >  2:2497142‑M2/52‑100 (MQ=255)
                                              aggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                     <  2:2127831‑M2/49‑1 (MQ=255)
                                                 cgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                                                  <  2:618764‑M2/52‑1 (MQ=255)
                                                 cgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                                                  <  2:2987692‑M2/52‑1 (MQ=255)
                                                 cgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                                                  <  2:1967390‑M2/52‑1 (MQ=255)
                                                 cgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                                                  >  1:1529177‑M2/49‑100 (MQ=255)
                                                     tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCgg                                              <  1:3166481‑M2/56‑1 (MQ=255)
                                                     tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCgg                                              <  1:3331613‑M2/56‑1 (MQ=255)
                                                      catcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                                             >  2:3451544‑M2/44‑100 (MQ=255)
                                                       atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtc                                            <  2:1505231‑M2/58‑1 (MQ=255)
                                                       atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtc                                            <  2:2417743‑M2/58‑1 (MQ=255)
                                                            tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGc                                       <  2:1548536‑M2/63‑1 (MQ=255)
                                                              ccgatctaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCgg                                     <  1:1407697‑M2/65‑1 (MQ=255)
                                                               ccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc                                    >  1:2961431‑M2/35‑100 (MQ=255)
                                                                cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc                                    >  1:3729824‑M2/34‑99 (MQ=255)
                                                                cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                   >  1:3731391‑M2/34‑100 (MQ=255)
                                                                cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                   >  1:27909‑M2/34‑100 (MQ=255)
                                                                  taaaaagcagtttgccagcgccgccttctgcCGGCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCag                                  <  1:949826‑M2/68‑1 (MQ=255)
                                                                   aaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCagag                                <  1:682165‑M2/70‑1 (MQ=255)
                                                                    aaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACATCAATGATGCGCCCGTCTTGGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGt                               >  1:2105469‑M2/30‑100 (MQ=255)
                                                                     aaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtctctgcggagatcgg                              >  2:1407709‑M2/29‑93 (MQ=255)
                                                                     aaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTc                              >  1:2612457‑M2/29‑100 (MQ=255)
                                                                      aatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                             <  1:3596493‑M2/73‑1 (MQ=255)
                                                                        tcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTc                           <  1:1626055‑M2/75‑1 (MQ=255)
                                                                         cagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCa                          <  2:2483741‑M2/76‑1 (MQ=255)
                                                                         cagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCa                          >  1:746766‑M2/25‑100 (MQ=255)
                                                                           gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                        >  2:667346‑M2/23‑100 (MQ=255)
                                                                           gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                        >  2:463652‑M2/23‑100 (MQ=255)
                                                                           gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                        <  1:493559‑M2/78‑1 (MQ=255)
                                                                            tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                       <  2:3170248‑M2/79‑1 (MQ=255)
                                                                              tgccagcgccgcctcctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTa                     >  1:601803‑M2/20‑100 (MQ=255)
                                                                               gccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAt                    <  2:1124193‑M2/82‑1 (MQ=255)
                                                                               gccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGCCTTCGGTCATCACTACGTTCATGTCAGTCCCTGCGGCAGAGCCTTCAACGTAt                    >  1:1616771‑M2/19‑100 (MQ=255)
                                                                                 cagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTc                  <  2:3855327‑M2/84‑1 (MQ=255)
                                                                                 cagcgccgccttctgcCGTCCCCTGCACTTCAATAATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                   >  2:623205‑M2/17‑99 (MQ=255)
                                                                                  agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                 >  2:78167‑M2/16‑100 (MQ=255)
                                                                                  agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                 <  1:2406984‑M2/85‑1 (MQ=255)
                                                                                   gcgccgccttctgcCGTCCCCTGCACTTCAATGGTGCGCCCGTCTTCGGTCATCACTACGTACATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                 <  1:2063747‑M2/85‑1 (MQ=255)
                                                                                   gcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTTATGTAGGTCTCTGCGGCAGAGTCTTCGAAGTATTCCa                >  1:1316092‑M2/15‑100 (MQ=255)
                                                                                     gccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGa              >  2:730502‑M2/13‑100 (MQ=255)
                                                                                      ccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt             <  2:3447864‑M2/89‑1 (MQ=255)
                                                                                       cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATc            >  2:42396‑M2/11‑100 (MQ=255)
                                                                                          cttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCa         <  1:588725‑M2/93‑1 (MQ=255)
                                                                                          cttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCa         <  2:2148571‑M2/93‑1 (MQ=255)
                                                                                             ctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCaaa       >  1:3144508‑M2/5‑99 (MQ=255)
                                                                                               gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCg    >  1:462110‑M2/3‑100 (MQ=255)
                                                                                               gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCg    <  2:2065191‑M2/98‑1 (MQ=255)
                                                                                               gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCg    >  2:3556073‑M2/3‑100 (MQ=255)
                                                                                                 cGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCt  <  1:3015925/100‑1 (MQ=255)
                                                                                                 |                                                                                                   
AGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCT  >  NC_000913/3815844‑3816040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑