| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,984 | T→G | 31.7% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,984 | 0 | T | G | 31.7% | 438.0 / 254.3 | 239 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (77/86); new base G (69/7); total (146/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.53e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.82e-01 | |||||||||||
Only 100 of 244 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 | ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:702400/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:1195709/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:3191822/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 1:672778/1‑100 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:3470915/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:282890/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:3693956/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:2060781/100‑3 (MQ=37) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATa < 2:3008974/100‑1 (MQ=37) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt > 2:3562546/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 1:1866644/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 2:488648/100‑1 (MQ=255) gatctggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:100918/95‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1625288/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 2:2933578/100‑1 (MQ=255) agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaa > 1:1928904/1‑100 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaaa > 2:73991/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:620944/1‑100 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc < 2:1315500/100‑1 (MQ=255) cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACa > 1:3186095/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt < 2:430284/100‑1 (MQ=255) cACCGGGTATACAGATTGTTGACAAAATGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCTGACCTAC‑AAGATCGTGCAAATTCCATAAAtt > 1:665051/1‑99 (MQ=17) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 2:444333/100‑1 (MQ=255) ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCa < 2:819002/100‑1 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑Att > 1:2698589/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑Atttt < 2:637278/100‑1 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTc > 1:1134631/1‑100 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑Gt > 1:238974/1‑100 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑Gt < 1:3673704/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTa < 2:1100419/100‑1 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAg < 1:2145517/100‑1 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAgcc > 1:2342165/1‑98 (MQ=255) cataaaCAAAGCGCACTTTGGTTATGCAGCATGCGGCGCTAACACCGTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTa > 1:2492197/6‑97 (MQ=17) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGcc < 2:3522025/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTg < 2:1159066/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCATTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTg > 2:2688905/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGa < 1:298523/100‑1 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGa > 2:765150/1‑100 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGAt > 1:2834820/1‑100 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGAt > 2:1519232/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATa < 1:423645/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGAGGCGGCGTTACCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCgg < 2:3364961/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:1257887/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAgc < 2:211256/100‑1 (MQ=255) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑A‑ATCTCCGTGTAGGCCTGATAAGCGTAGCGCAt > 2:2814988/8‑100 (MQ=18) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCAG‑‑‑G‑GACTAT‑‑GTAGGCCTGATAAGCATAGCGCAt > 2:2718370/8‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGCAG‑‑‑A‑AATCAT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:1585578/7‑100 (MQ=17) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAG‑‑‑A‑GTTCAC‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:1985931/7‑100 (MQ=17) tgtaggCCGGATAAGGCGTTCACGCCGCATCCAGCCTAC‑AAAATCATGAAAATTCAATACATTGCAA‑‑‑G‑ATTTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:3651936/6‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAG‑‑‑G‑ACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:2946257/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCAG‑‑‑AGATCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:1787920/5‑100 (MQ=17) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAG‑‑‑A‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:3749263/4‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 2:3227214/1‑100 (MQ=255) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 2:2254131/1‑100 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAG‑‑‑A‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1266113/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCAG‑‑‑G‑GACTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 1:3522269/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAG‑‑‑G‑AGTTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgaga > 2:2876384/3‑97 (MQ=21) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAG‑‑‑A‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3286393/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAG‑‑‑G‑ACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:52625/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑A‑ATCTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:258154/2‑100 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAG‑‑‑G‑ACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:614621/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCAG‑‑‑T‑TTATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 1:998545/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCAG‑‑‑T‑TTATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 2:3051095/1‑99 (MQ=25) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCAG‑‑‑AGATTAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:2804639/1‑99 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCAG‑‑‑A‑GATTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:3699756/9‑98 (MQ=17) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1906813/1‑100 (MQ=255) ccGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCAG‑‑‑G‑AGCTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:3843047/1‑98 (MQ=18) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑A‑ATCTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 2:1682055/8‑97 (MQ=18) cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 2:2374711/1‑100 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAG‑‑‑A‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:588582/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCAT‑‑‑G‑GGCCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCActtt > 1:2643936/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAG‑‑‑A‑GTTCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:934387/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGCAATTCA‑ACTT‑‑‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 2:929691/7‑97 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAG‑‑‑G‑ACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:664762/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGATC‑‑‑G‑ATCCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3099603/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGATC‑‑‑G‑ATCCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3758047/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCAA‑‑‑G‑ATTTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgct > 2:39541/7‑96 (MQ=17) ggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGCAG‑‑‑G‑AACGAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 1:1013021/7‑96 (MQ=21) ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 1:1435319/1‑100 (MQ=255) gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCAG‑‑‑AGATCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattta > 2:1215837/6‑99 (MQ=17) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:866431/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:436968/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:763975/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 2:2436025/100‑1 (MQ=255) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCaaaaatgcctg < 2:152752/100‑11 (MQ=255) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:3453735/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:2666780/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:1056723/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:1461450/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2184453/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 2:1743360/1‑100 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:3180371/100‑1 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 2:2007269/1‑100 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 1:1558964/100‑1 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGTCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:916708/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1961149/100‑1 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGTTTTTTCTATCa > 1:1495488/1‑100 (MQ=17) gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 1:202999/1‑100 (MQ=255) gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:1743347/100‑1 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:3294168/100‑1 (MQ=255) | TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |