| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 30.7% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 30.7% | 394.1 / 211.9 | 239 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (78/87); new base C (68/5); total (146/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.77e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.71e-02 | |||||||||||
Only 100 of 243 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705887‑3706083 | gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:1195709/100‑1 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt < 2:1429576/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 1:433704/1‑100 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:3785481/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:283033/100‑1 (MQ=255) ggCGCTGTACGCAGAGGCACAGCGCAAGCGATTATACAGATTGTGGAAAAAGTGCGCGTTGTTTATGCCTTATAAGGCGTTAACGCCGCATCCGGca < 1:903820/97‑2 (MQ=16) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACa > 1:2980986/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAGAAAATCg < 2:2023992/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCg > 1:1866644/1‑100 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGt > 2:588420/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg < 2:1831757/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg > 2:452989/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCAGGCCTACAAAATCGTg > 2:292574/1‑100 (MQ=255) gatctggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGc < 1:100918/95‑1 (MQ=255) agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCaa > 1:1928904/1‑100 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCaaa > 1:3690706/1‑100 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCaaa > 2:73991/1‑100 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAAt < 2:428649/100‑1 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCagatc > 2:100920/1‑96 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTc < 1:2172662/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGGTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTc < 1:696068/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCTGGCCTACAAAATCGTGCAAATTCAAt < 2:2348666/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAt < 2:3623243/100‑1 (MQ=255) aCCGGGGATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAGCCGGCCTACAAAATCGTGCAAATTCAATACATTGc < 2:1704188/100‑1 (MQ=255) ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCa < 2:819002/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑g < 2:689259/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑g > 2:1595785/1‑100 (MQ=255) ataCAGATTGTTGCACAAGTGCTCTGTGTTTATTCCGTATGCGGCGTTTACGCCGTATCCTGCCTACAAAATCGTGAAAATTCAATGCATTGCA‑G‑‑‑a < 1:3735098/96‑1 (MQ=12) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTc > 1:1134631/1‑100 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGt > 1:238974/1‑100 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAg < 1:2145517/100‑1 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAg < 1:604568/100‑1 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAgcc > 1:2342165/1‑98 (MQ=255) cataaaCAAAGCGCACTTTGGTTATGCAGCATGCGGCGCTAACACCGTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTa > 1:2492197/6‑97 (MQ=17) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTg > 2:1555601/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGa > 2:765150/1‑100 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGAt > 2:1519232/1‑100 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTACA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGAt < 2:1123638/100‑1 (MQ=255) aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATaa < 2:1208219/100‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCg < 1:625695/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAgc < 1:1257887/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAgcg > 1:3477021/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAgcg > 2:3190479/1‑100 (MQ=255) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCA‑G‑‑‑G‑GA‑CTATGTAGGCCTGATAAGCATAGCGCAt > 2:2718370/8‑100 (MQ=18) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCA‑G‑‑‑AGAT‑TAT‑GTAGGCCTGATAAGCGTAGCGCAt > 2:297290/8‑100 (MQ=17) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑G‑‑‑A‑GT‑TCACGTAGGCCTGATAAGCGTAGCGCATc > 1:1985931/7‑100 (MQ=17) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCa < 2:2686460/100‑1 (MQ=255) tctaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGCA‑G‑‑‑G‑AG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAg < 1:2876362/95‑1 (MQ=21) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAg > 2:3411144/1‑100 (MQ=255) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAg < 1:3191798/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATACAAAAACCTGCAAATTCAATATATTGCA‑G‑‑‑G‑AT‑ACGTGTAGGCCTGATAAGCGTAGCGCATCAg > 2:3044992/5‑100 (MQ=18) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCA‑G‑‑‑A‑AA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:3749263/4‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAATTC‑TGCAAATTCAACAAATTGC‑‑G‑‑‑A‑ATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3093945/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTACA‑G‑‑‑A‑AA‑TCTTGTAGGCCTGATAAGCGTAGCGCATCACGc > 1:2711244/3‑100 (MQ=14) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCA‑‑‑‑‑A‑TA‑TGACGTAGGCCTGATAAGCGTAGCGCATCAGGcg > 2:3844775/3‑99 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGCA‑G‑‑‑G‑AG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAgaga > 2:2876384/3‑97 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGCA‑G‑‑‑G‑AG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2378803/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCATACAAAATTGTGTAAATTCAATAAATTGAT‑C‑‑‑G‑AT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3519958/3‑100 (MQ=21) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAATTC‑TGCAAATTCAACAAATTGC‑‑G‑‑‑A‑ATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:3805789/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCA‑G‑‑‑A‑AA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3286393/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCA‑G‑‑‑G‑AG‑CTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:951293/2‑100 (MQ=17) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAATTC‑TGCAAATTCAACAAATTGC‑‑G‑‑‑A‑ATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:1277516/1‑100 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑G‑‑‑T‑TT‑ATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 2:2003096/9‑98 (MQ=25) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTGCA‑A‑‑‑G‑AT‑TTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCacg > 1:3401505/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCA‑G‑‑‑G‑AG‑CTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:3218106/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCA‑G‑‑‑G‑AG‑CTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:2641618/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCA‑G‑‑‑G‑GA‑CTATGTAGGCCTGATAAGCATAGCGCATCAGGCagc > 1:2696896/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCA‑G‑‑‑A‑GA‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:3697232/9‑98 (MQ=17) ccGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1906813/1‑100 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:3546130/1‑100 (MQ=255) ngataaggcgTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGG‑‑‑G‑AC‑TAT‑GTAGGCCTGATAAGCATAGCGCATCAGGCagctt > 2:3145180/7‑96 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑G‑‑‑A‑GT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3307601/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑G‑‑‑A‑GT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:934387/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑G‑‑‑A‑GT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1673375/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCA‑ATTCA‑AC‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 2:929691/7‑97 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTGCA‑A‑‑‑G‑AT‑TTTCGTAGGCCTGATAAGCGTAGCGAATCAGGCacgc > 2:2779062/7‑96 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGCA‑G‑‑‑G‑AG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 2:2166157/7‑98 (MQ=21) ggataaggcgTTCACGCCGCATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCA‑G‑‑‑G‑AA‑CGATGTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 1:1013021/7‑96 (MQ=21) ggATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt < 2:1220856/100‑1 (MQ=255) ggATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 1:1435319/1‑100 (MQ=255) gataaggcgTTCACGCCGCATCCGGCCTACAAATCCTTGCGAATTCAATATATTGTATG‑‑‑G‑AA‑ATTC‑‑AGGCCTGATAAGCGTAGCGCATCAGGCttttcac > 1:2805802/6‑97 (MQ=37) gataaggcgTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑G‑‑‑T‑TT‑ATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaatctt > 2:637052/6‑95 (MQ=25) gataaggcgTTCACGCCGCATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCA‑G‑‑‑G‑AA‑ACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAgtttt > 2:436250/6‑100 (MQ=18) aTGCGGCGTTAACGCTTTATCCGGCCTACAAAATCGTGCAAATCCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:491520/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATACGCGGAGCGCATCAGCCAttttttc > 2:663766/1‑97 (MQ=255) cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttttttttt > 1:6669/1‑96 (MQ=255) cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 2:2436025/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:178452/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:1461450/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:1056723/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:314861/100‑1 (MQ=255) cttccgatctATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:2592890/91‑1 (MQ=255) tAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 2:2065443/1‑100 (MQ=255) tAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 1:1558964/100‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:3528349/100‑1 (MQ=255) cGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGTTTTTTCTATCa > 1:1495488/1‑100 (MQ=17) cGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:515611/99‑1 (MQ=255) gCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 1:202999/1‑100 (MQ=255) gCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:1743347/100‑1 (MQ=255) ncTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 1:823598/2‑100 (MQ=255) | GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑G‑‑‑A‑AT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705887‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |