Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,781,1450CG21.6% 253.7 / 22.9 102intergenic (+128/‑70)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base C (52/28);  new base G (0/22);  total (52/50)
Fisher's exact test for biased strand distribution p-value = 7.43e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 105 total aligned reads displayed.

CCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGA  >  NC_000913/3781047‑3781243
                                                                                                    |                                                                                                   
cccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCg                                                                                                    >  2:2893934/1‑100 (MQ=255)
 ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCgg                                                                                                   >  1:1222910/1‑100 (MQ=255)
 ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCgg                                                                                                   >  1:1925593/1‑100 (MQ=255)
   tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCgggg                                                                                                 <  2:2398022/100‑1 (MQ=255)
   tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCgggg                                                                                                 <  1:706016/100‑1 (MQ=255)
    cAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑t                                                                                               >  1:477074/1‑100 (MQ=255)
    cAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑t                                                                                               <  1:2673933/100‑1 (MQ=255)
    cAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTATTTTTCTCCCTCGCCT‑CTCCGGGGAGAG‑GGCCgttg                                                                                                 <  1:2051289/99‑4 (MQ=255)
       ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAg                                                                                            <  1:1119998/100‑1 (MQ=255)
       ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAg                                                                                            <  2:259105/100‑1 (MQ=255)
        gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAgg                                                                                           <  2:1202564/100‑1 (MQ=255)
         tctggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAggg                                                                                          <  2:2045457/97‑1 (MQ=255)
         agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAggg                                                                                          <  2:667310/100‑1 (MQ=255)
          gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTGTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAgggg                                                                                         <  2:2103697/100‑1 (MQ=255)
          gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAgggg                                                                                         <  1:1241545/100‑1 (MQ=255)
           agGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGa                                                                                        <  2:422061/100‑1 (MQ=255)
            ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGaa                                                                                       >  2:19054/1‑100 (MQ=255)
            ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGaa                                                                                       >  2:1862961/1‑100 (MQ=255)
              ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGaaaa                                                                                     <  2:2495604/100‑1 (MQ=255)
              ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGaaa                                                                                      >  1:2523731/1‑99 (MQ=255)
               gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAg                                                                                    <  2:2609863/100‑1 (MQ=255)
               gACCGTTCAGCTCTGGATGTACCCCCTCACTCGGAAACGACACCACACTATTTTGGTCGCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGCGAAAAg                                                                                    <  1:378414/100‑1 (MQ=25)
                 ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGc                                                                                  <  1:2911026/100‑1 (MQ=255)
                 ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGc                                                                                  <  2:427289/100‑1 (MQ=255)
                 ccGTTCGGCCCTGTTTGTTCTCCCTCACACTCACTCGACTCCTCACTCCTTTTTTCTCCCTCACCC‑CTCCGGGGAGAG‑GGACGGGG‑TGAgg                                                                                           <  1:1204063/91‑1 (MQ=255)
                   gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACGCCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCg                                                                                >  1:1599517/1‑100 (MQ=255)
                   gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCTTTCGCTC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCg                                                                                >  2:1337895/1‑100 (MQ=255)
                   gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCg                                                                                >  1:1826534/1‑100 (MQ=255)
                       ggCGCTGTTTGTTCTCCCTCCCCCTGAAACGACACCGCACTCTTTTTTTCGCCCTCGCCC‑CGCGGGGGAGGG‑GGCGGGGG‑TGGGGGGAAAAGGCCGc                                                                               <  1:1951541/97‑1 (MQ=255)
                          gcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCt                                                                         >  1:877827/1‑100 (MQ=255)
                            tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCa                                                                       >  1:2572714/1‑100 (MQ=255)
                             ttatgtcCCCCCCCCCTCTAAAACGCCCCCGCACGTTTTTTTTCTCCCCCGCCC‑CCCGGGGGAAAG‑GGCGGGGG‑GGGGGGGAAAAGGCCGCACTGCTCAc                                                                      <  2:1337278/99‑1 (MQ=255)
                                tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTTCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGTGGGGAAAAGGCCGCACTGCTCACCaa                                                                   >  1:112387/1‑100 (MQ=255)
                                 gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAAt                                                                  >  2:1041675/1‑100 (MQ=255)
                                  taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAAtt                                                                 >  1:2617784/1‑100 (MQ=255)
                                  taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAAt                                                                  >  1:2802577/1‑99 (MQ=255)
                                      cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                             >  1:2905937/1‑100 (MQ=255)
                                      cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                             >  2:548035/1‑100 (MQ=255)
                                      cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                             >  2:2221882/1‑100 (MQ=255)
                                        cccACTCAGAACCGCCCCCGCACTCTTTTTTCCCCCCCCCCCC‑CCCGGGGGGGGG‑GGCGGGGG‑GGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                           <  2:1718919/98‑1 (MQ=255)
                                        cTCCCTCTGAAACCCCACCGCCCTCTTTTTTCCCCCCTCGCCC‑CCCGGGGGAGGG‑GCCCGGGG‑TGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                           <  1:1569474/100‑1 (MQ=255)
                                        cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                           >  1:223834/1‑100 (MQ=255)
                                        cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                           >  1:920378/1‑100 (MQ=255)
                                          ccctcaaaaaCGACCCCCCTCTTTTTTTTCCTCCTGCGCCC‑CCCGGGGGAGGG‑GGCGGGGG‑TGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                           <  2:2816541/91‑1 (MQ=255)
                                          cACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTa                                                         >  2:644945/1‑100 (MQ=255)
                                           aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTAt                                                        >  2:2354340/1‑100 (MQ=255)
                                            ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                       >  1:1611450/1‑100 (MQ=255)
                                             tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                      >  2:533256/1‑100 (MQ=255)
                                             tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                      >  2:2721988/1‑100 (MQ=255)
                                              ntGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt                                                     >  2:1694504/2‑100 (MQ=255)
                                              ctGAAATGACCCTCCGCTTTTTTTTTCCCCCTACCCC‑CTGGGGGGAGAG‑GCCCGGGG‑TGAGGGTAAAAGGCCGCACTTCTCACCAATTTTCTGCTATcc                                                      <  1:142319/99‑1 (MQ=255)
                                               tGAACCGAACCCGCATTCTTTTTTTCTCCCCCGCCC‑CCCCGGGGGGAG‑GGCGGGGT‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTc                                                              <  1:2320242/90‑1 (MQ=255)
                                               tGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                                    >  2:847700/1‑100 (MQ=255)
                                                gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc                                                   >  1:1941120/1‑100 (MQ=255)
                                                        acCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                           >  2:1810006/1‑100 (MQ=255)
                                                         ccccACCCTTTTTTTCCCCCCCGCCC‑CCCCGGGGAGGG‑GCCCGGGT‑GGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc                                               <  1:656307/92‑1 (MQ=255)
                                                         ccGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt                                          >  2:500231/1‑100 (MQ=255)
                                                         ccGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt                                          >  2:1852085/1‑100 (MQ=255)
                                                         ccGCACTCTTTTTCGCGCCCTGGCCC‑CCCGGGGGGGGG‑GGCGGGTG‑TGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCa                                            <  1:868893/98‑1 (MQ=255)
                                                           gCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt                                          >  1:465101/1‑98 (MQ=255)
                                                           gCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa                                        >  1:1086963/1‑100 (MQ=255)
                                                            ccctttttttttCTCCCCCCCCC‑CTCGGGGGAGGG‑GGCGGGGG‑GGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                                       <  2:523947/95‑1 (MQ=255)
                                                            ccctttttttttCCCCCCCCCCC‑CTCCGGGGGGAG‑GGCGGGGG‑GGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa                                        <  2:363890/94‑1 (MQ=255)
                                                              ctctTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                     >  2:465714/1‑100 (MQ=255)
                                                               tttttttttCCCCCCGGCCC‑CCCGGGGGGGGG‑GGCGGGGG‑TGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                                    <  1:2213892/98‑1 (MQ=255)
                                                                ctTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                   >  2:1843679/1‑100 (MQ=255)
                                                                 ttttttcCTCCC‑CGCCCTTTTCGGGGGGGG‑GTCCGGGT‑GGGGGTTAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                                  <  2:1717484/100‑1 (MQ=255)
                                                                 ttttttcCCCCCCCCCCC‑CCCCGGGGGGGG‑GGCGGGGG‑GGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                      <  2:396702/96‑1 (MQ=255)
                                                                   tttttCCCCCGCGCCC‑CCCCGGGGGGAG‑GGCCGGGT‑TGAGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                                <  1:608609/100‑1 (MQ=255)
                                                                    ttttCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                               >  2:2802947/1‑100 (MQ=255)
                                                                    ttttCTCCCGCGCCC‑CGCGGGGGGGAG‑GGCGGGGG‑GGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa                                 <  1:1868336/98‑1 (MQ=255)
                                                                    ttttCCCCCCCGCCC‑CCCGGGGGGGGG‑GGCCGGGG‑TGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                               <  1:548033/100‑1 (MQ=255)
                                                                    tttcCTCCCCCCCCC‑CTCCGGGGGGGG‑GGCGGGGG‑GGAGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                               <  2:449906/100‑1 (MQ=255)
                                                                        ctcCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                           >  1:2008443/1‑100 (MQ=255)
                                                                        ctcCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                           >  2:261993/1‑100 (MQ=255)
                                                                        ccccccccccc‑cccGGGGGGGGG‑GGCGGGGG‑GGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                           <  2:1086968/92‑1 (MQ=255)
                                                                          cccTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                         >  1:2409570/1‑100 (MQ=255)
                                                                          cccGCGCCC‑CCCGGGGGAGAG‑GGCCGGGG‑GGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                         <  1:2842273/100‑1 (MQ=255)
                                                                           cttCGCCC‑CTCGGGGAAGGG‑GGCGGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                        <  2:2291978/98‑1 (MQ=255)
                                                                            cTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                       >  2:2494172/1‑100 (MQ=255)
                                                                            cTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                       >  2:2492850/1‑100 (MQ=255)
                                                                                ccc‑cccGGGGGAGGG‑GGCGGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                             <  1:1862953/90‑1 (MQ=255)
                                                                                ccc‑cccCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                           <  1:1896000/92‑1 (MQ=255)
                                                                                ccc‑cTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc                   >  2:2189759/1‑100 (MQ=255)
                                                                                 cc‑ccccGGGGAGAGTGGCCGGGGCTAGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                        <  2:1217010/96‑1 (MQ=255)
                                                                                  cccccgggggAGGG‑GGCGGGGG‑GGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg                  <  2:2784665/94‑1 (MQ=255)
                                                                                  c‑cTCCGGGGAGGG‑GGCGGGGG‑TGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                 <  2:991450/100‑1 (MQ=255)
                                                                                    cggaggggCGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                >  2:1697215/5‑100 (MQ=255)
                                                                                    cTCGGGGAAGAT‑GCCGGGGG‑TATGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg                  <  2:747507/98‑1 (MQ=255)
                                                                                    cTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCGCTGCGCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                >  1:1460390/1‑100 (MQ=255)
                                                                                    cTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                >  2:1302583/1‑100 (MQ=255)
                                                                                      cggggggggg‑ggCGGGGG‑GGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTAc               <  2:1477120/97‑1 (MQ=255)
                                                                                        ggggAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTACTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACttt            >  2:2389524/1‑100 (MQ=255)
                                                                                           gagaG‑GCCGGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc          <  1:827619/99‑1 (MQ=255)
                                                                                               g‑ggCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTACGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc     >  1:2893243/1‑100 (MQ=255)
                                                                                                 ggacGGGG‑GGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc     <  2:465103/96‑1 (MQ=255)
                                                                                                 ggCGGGGG‑GGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCa    <  2:1236108/100‑1 (MQ=255)
                                                                                                  gCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg   >  2:2332083/1‑100 (MQ=255)
                                                                                                   ccGGGG‑TGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg   <  1:1357092/99‑1 (MQ=255)
                                                                                                   ccGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa  >  2:1711274/1‑100 (MQ=255)
                                                                                                    |                                                                                                   
CCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAG‑GGCCGGGG‑TGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGA  >  NC_000913/3781047‑3781243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑