BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,196,101	G→T	intergenic (‑2/+231)	thiC ← / ← rsd	phosphomethylpyrimidine synthase/stationary phase protein, binds sigma 70 RNA polymerase subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,196,101	0	G	T	100.0%	403.9 / NA	116	intergenic (‑2/+231)	thiC/rsd	phosphomethylpyrimidine synthase/stationary phase protein, binds sigma 70 RNA polymerase subunit
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (59/57); total (59/57)

Only 100 of 118 total aligned reads displayed.

GCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGT  >  NC_000913/4196004‑4196196

gCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCt                                                                                               >  2:2698239/1‑100 (MQ=255)

 cGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAtctc                                                                                              <  1:2072806/100‑1 (MQ=255)

  gTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCa                                                                                             >  1:2288432/1‑100 (MQ=255)

  gTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCa                                                                                             >  1:2773228/1‑100 (MQ=255)

  gTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCa                                                                                             >  2:2505306/1‑100 (MQ=255)

  gTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCa                                                                                             >  2:421221/1‑100 (MQ=255)

   ttttGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCAt                                                                                            >  2:471999/1‑100 (MQ=255)

     ttGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTc                                                                                          >  2:611141/1‑100 (MQ=255)

      tGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTcc                                                                                         <  1:1025912/100‑1 (MQ=255)

      tGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTcc                                                                                         <  1:1874603/100‑1 (MQ=255)

      tGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTcc                                                                                         <  1:693127/100‑1 (MQ=255)

      tGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTcc                                                                                         <  1:803625/100‑1 (MQ=255)

      tGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTcc                                                                                         >  2:899484/1‑100 (MQ=255)

       gatctGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCa                                                                                        <  1:289870/96‑1 (MQ=255)

       gAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCa                                                                                        >  2:2386954/1‑100 (MQ=255)

        aGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCaa                                                                                       >  1:2351942/1‑100 (MQ=255)

         gTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCaaa                                                                                      >  2:1564618/1‑100 (MQ=255)

          ttGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCaaaa                                                                                     >  2:252604/1‑100 (MQ=255)

            gggAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCTaagat                                                                                    >  2:289871/1‑96 (MQ=255)

            gggAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAg                                                                                   >  2:359767/1‑100 (MQ=255)

              gAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGtt                                                                                 >  2:2811529/1‑100 (MQ=255)

               aaaaGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATATAAATACAAAAAg                                                                                   <  1:2733105/97‑1 (MQ=255)

               aaaGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTa                                                                                >  1:606329/1‑100 (MQ=255)

                aaGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTaa                                                                               >  2:1982327/1‑100 (MQ=255)

                aaGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTaa                                                                               <  1:362721/100‑1 (MQ=255)

                  ggCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAgg                                                                             >  1:1228065/1‑100 (MQ=255)

                  ggCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAgg                                                                             >  1:2185957/1‑100 (MQ=255)

                  ggCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAgg                                                                             <  1:421219/100‑1 (MQ=255)

                     ggTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACg                                                                          >  2:2400853/1‑100 (MQ=255)

                     ggTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACg                                                                          <  2:115358/100‑1 (MQ=255)

                     ggTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACg                                                                          >  1:1455299/1‑100 (MQ=255)

                      gTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGt                                                                         <  2:1889528/100‑1 (MQ=255)

                        gCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAGAAGTTAAGGACGTgg                                                                       >  2:2953208/1‑100 (MQ=255)

                        gCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTgg                                                                       >  1:2415956/1‑100 (MQ=255)

                          cTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCt                                                                     >  1:376730/1‑100 (MQ=255)

                          cTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCt                                                                     <  1:2035850/100‑1 (MQ=255)

                          cTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCt                                                                     >  1:1088505/1‑100 (MQ=255)

                          cTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCt                                                                     <  1:1171265/100‑1 (MQ=255)

                          cTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCt                                                                     >  2:279690/1‑100 (MQ=255)

                            tCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTg                                                                   <  2:249990/100‑1 (MQ=255)

                            tCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTg                                                                   <  2:2090207/100‑1 (MQ=255)

                              cAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTc                                                                 <  1:1464742/100‑1 (MQ=255)

                                gggTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAg                                                               <  1:2525230/100‑1 (MQ=255)

                                gggTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAg                                                               <  2:36633/100‑1 (MQ=255)

                                  gtgtCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAgac                                                             <  1:1654841/100‑1 (MQ=255)

                                  gtgtCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAgac                                                             <  2:1367469/100‑1 (MQ=255)

                                    gtCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAgacga                                                           >  1:867590/1‑100 (MQ=255)

                                     tCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAgacgac                                                          <  1:614842/100‑1 (MQ=255)

                                      cGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGacgacg                                                         >  1:1239679/1‑100 (MQ=255)

                                       gATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACgg                                                        >  2:123440/1‑100 (MQ=255)

                                       gATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACgg                                                        <  1:1037850/100‑1 (MQ=255)

                                       gATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACgg                                                        >  2:1033930/1‑100 (MQ=255)

                                        aTAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGa                                                       <  2:2809582/100‑1 (MQ=255)

                                         tAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACCTATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGAt                                                      <  1:1665332/100‑1 (MQ=255)

                                          aaaaTGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAATAAGTTAAGGACGTGGCTTGGCAGACGTCGGATg                                                     >  2:440093/1‑100 (MQ=255)

                                           aaaTGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAATGACGTGGCTTGTCAGACGACGGATGa                                                    <  1:628483/100‑1 (MQ=255)

                                           aaaTGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGa                                                    <  1:760473/100‑1 (MQ=255)

                                            aaTGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGaa                                                   >  2:1011439/1‑100 (MQ=255)

                                               gTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCa                                                <  1:302814/100‑1 (MQ=255)

                                                ttGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCaa                                               >  1:255886/1‑100 (MQ=255)

                                                 tGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAag                                              >  1:2547934/1‑100 (MQ=255)

                                                  gggCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAaga                                             >  2:124943/1‑100 (MQ=255)

                                                     cccGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGAc                                          >  2:836456/1‑100 (MQ=255)

                                                       cgatcgcgTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGAc                                          <  2:2098741/94‑1 (MQ=255)

                                                       cGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGa                                        >  2:909799/1‑100 (MQ=255)

                                                          gcgcGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATcg                                     <  1:2261522/100‑1 (MQ=255)

                                                           cgcgTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATcgc                                    >  2:1587365/1‑100 (MQ=255)

                                                            gcgTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATcgcc                                   <  1:1107154/100‑1 (MQ=255)

                                                             cgTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATcgccg                                  >  1:179454/1‑100 (MQ=255)

                                                             cgTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATcgccg                                  <  1:2730561/100‑1 (MQ=255)

                                                             cgTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATcgccg                                  <  1:1011434/100‑1 (MQ=255)

                                                               ttgttCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCa                                <  1:9319/100‑1 (MQ=255)

                                                               ttgttCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCa                                >  1:2761178/1‑100 (MQ=255)

                                                                 gttCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAgg                              >  1:1943756/1‑100 (MQ=255)

                                                                 gttCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAgg                              >  2:322091/1‑100 (MQ=255)

                                                                 gttCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAgg                              <  2:2351952/100‑1 (MQ=255)

                                                                 gttCGCGGCGGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAgg                              <  2:683365/100‑1 (MQ=255)

                                                                     gcggcgGGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgcg                          <  1:1468126/100‑1 (MQ=255)

                                                                        gcggGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgcgatg                       <  1:619701/100‑1 (MQ=255)

                                                                        gcggGTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgcgatg                       <  1:909795/100‑1 (MQ=255)

                                                                          gggTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgcgatgcg                     <  1:2991203/100‑1 (MQ=255)

                                                                            gTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgcgatgcgat                   >  2:2356521/1‑100 (MQ=255)

                                                                            gTCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGgcgatgcgat                   <  1:1564609/100‑1 (MQ=255)

                                                                             tCAGTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATa                  <  2:1219848/100‑1 (MQ=255)

                                                                               aGTTTCGTTGCAGACATATCTCATTCCAAAAAGATAAGGACGTGGCTTGTCAGATGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGc                <  1:1484899/100‑1 (MQ=255)

                                                                                gTTTTGTTGCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCa               >  2:2056604/1‑100 (MQ=255)

                                                                                   ttgttgCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGAt            <  1:2811513/100‑1 (MQ=255)

                                                                                       tgCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAAc        <  1:779673/100‑1 (MQ=255)

                                                                                        gCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAAct       <  2:1088510/100‑1 (MQ=255)

                                                                                        gCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAAct       >  1:20455/1‑100 (MQ=255)

                                                                                        gCAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAAct       >  2:2322388/1‑100 (MQ=255)

                                                                                         cAGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAAct       >  1:2653000/1‑99 (MQ=255)

                                                                                          aGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAActct     >  1:2027361/1‑100 (MQ=255)

                                                                                          aGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAActct     <  1:471997/100‑1 (MQ=255)

                                                                                          aGACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAActct     <  2:1861777/100‑1 (MQ=255)

                                                                                           gACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCtt    >  2:2321869/1‑100 (MQ=255)

                                                                                           gACATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCtt    >  1:1140504/1‑100 (MQ=255)

                                                                                            aCATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTg   <  2:2118987/100‑1 (MQ=255)

                                                                                            aCATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTg   <  1:2918836/100‑1 (MQ=255)

                                                                                             cATATCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGt  <  2:1144210/100‑1 (MQ=255)

GCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCAGACGACGGATGAAGCAAGAGACGATCGCCGCAGGGGCGATGCGATAGCAGATTAACTCTTGT  >  NC_000913/4196004‑4196196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`