New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 213635	NA (NA)	19 (0.160)	10/164	NT	NA	noncoding (4/37 nt)	REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 213668	NA (NA)					noncoding (37/37 nt)	REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences

CTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/213537‑213635 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCGTC  <  NC_000913/213668‑213563                                                                                                                                                                                                               CTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAG                                                                                                           <  2:553763/100‑1   GATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCC                                                                                                         >  2:496309/1‑100    ATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCG                                                                                                        >  2:108323/1‑100     TTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGG                                                                                                       <  2:3108978/100‑1     TTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGG                                                                                                       <  2:2103596/100‑1     TTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGG                                                                                                       <  1:368031/100‑1     TTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGG                                                                                                       <  1:1988740/100‑1      TGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGA                                                                                                      >  1:2650849/1‑100       GCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGAT                                                                                                     <  1:3534214/100‑1       GCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGAT                                                                                                     >  2:1683747/1‑100       GCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGAT                                                                                                     >  1:183414/1‑100                                AAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGG                                                                            <  2:2652181/100‑1                                AAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGG                                                                            <  1:1648188/100‑1                                 AGAAGGTGTGGCTGAAGGTGAGAATGTCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGCTTGATGCGTCTTATCCGGC                                                                           <  1:1612195/100‑1                                 AGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGC                                                                           <  1:1596961/100‑1                                  GAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCT                                                                          <  2:1395133/100‑1                                  GAAGGGGTGGCGGAAGGTTATAATGGCGTAACTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGC                                                                           <  1:2235822/99‑1                                   AAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTT                                                                         <  2:442958/100‑1                                   AAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTT                                                                         <  1:1410095/100‑1                                   AAGGTATGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTT                                                                         <  1:1496908/100‑1                                    AGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTTGCAGAAAACGCTTAGTTAAGTCAAAGCCCGATGCGACGTTTAATGCGTCTTATCCGGCTT                                                                         <  1:3194877/99‑1                                    AGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTT                                                                        <  1:2055902/100‑1                                     GGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTT                                                                         <  2:33998/98‑1                                     GGTGTGGCTGAAAGTGAGAATGGAGTAAGTTTTGGCTGGCAGCATACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCT                                                                          <  1:2718901/97‑1                                      GTGTGGCTGAAGGTGAGGATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCA                                                                      <  2:657389/100‑1                                      GTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCA                                                                      <  2:656998/100‑1                                       TGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCAC                                                                     <  2:213725/100‑1                                        GTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACT                                                                    <  1:3548103/100‑1                                                AGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAG                                                            <  2:2924628/100‑1                                                                          GGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGC                                  <  2:2930068/100‑1                                                                                                    GCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGAGAAAACCTACGCCATACTCACCTTCAGCCACACCTTCT        >  1:2402822/1‑100                                                                                                    GCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCT        >  2:70808/1‑100                                                                                                     CCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTT       >  1:3065129/1‑100                                                                                                     CCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTT       <  2:2118712/100‑1                                                                                                     CCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCT           <  1:2052628/96‑1                                                                                                      CGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTCACTAAGCGATTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTT       >  2:662066/1‑99                                                                                                      CGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTG      <  1:1360544/100‑1                                                                                                      CGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTG      >  2:3525947/1‑100                                                                                                        GATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCG    <  1:369626/100‑1                                                                                                        GATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCG    <  1:1158088/100‑1                                                                                                         ATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCGT   >  2:620697/1‑100                                                                                                         ATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCGT   <  2:1595981/100‑1                                                                                                          TGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCGTC  <  1:2024871/100‑1                                                                                                                                                                                                               CTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/213537‑213635 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCGTC  <  NC_000913/213668‑213563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.