| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1145983 | NA (NA) | 8 (0.070) | 7/162 | NT | NA | noncoding (56/75 nt) | REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 1145994 | NA (NA) | noncoding (67/75 nt) | REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
AAAAGCTGCGTAACGCGCGCTAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1145877‑1145983‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatgTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCAACCGCCCATTATCAGGTTTATATGCTTGTATTAG < NC_000913/1145994‑1145896 AAAAGCTGCGTAACGCGCGCTAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTG < 2:13773/100‑1 AGCTGCGTAACGCGCGCTAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCG < 1:1073653/100‑1 AGCTGCGTAACGCGCGCTAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCG < 2:29672/100‑1 GCTGCGTAACGCGCGCTAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACTCCGCATCAGGCCGCCAGCACCGATTGCCGG > 1:2806180/1‑100 GCTGCGTAACGCGCGCTAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGG < 1:1671316/100‑1 CTGCGTAACGCGCGCTAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGA > 2:2088055/1‑100 CTGCGAAACGCGCGCAAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGAAAAGGCGTTTACGCCGCATCAGGCCGCCAGAACCGATTGCAGGA > 1:331460/1‑100 TGCGTAACGCGCGCTAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGAT > 2:1648184/1‑100 GCGTAACGCGCGCTAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGATG < 1:2028071/100‑1 CGTAACGCGCGCTAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGATG > 1:2204445/1‑99 AAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGATGTGGTTACGTCGCATCCGGC < 2:2006661/100‑1 AGCATATAAACCTGATAATGGGCGGTTGGCCTGAGAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGATGTGGTTACGTCGCATCCGGCA < 1:1422127/100‑1 GCATATAAACCGGATAAGGGGCGGTTGGCCTGATAAGTCGTTTACGCCGCATCAGCCCGCCAGCACCGATTGCCGGATGTGGTTACGTCGCATCCGGCAA < 1:414049/100‑1 CATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGATGTGGTTACGTCGCATCCGGCAAT < 2:27379/100‑1 ATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGATGTGGTTACGTCGCATCCGGCAATC < 1:883664/100‑1 ATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGATGTGGTTACGTCGCATCCGGCAATCGG < 2:3269390/100‑1 ATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGATGTGGTTACGTCGCATCCGGCAATCGG < 2:64063/100‑1 AACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGATGTGGTTACGTCGCATCCGGCAATCGGT < 1:623562/98‑1 GCCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCAACCGCCCATTATCAGGTTTATATGCTT > 1:835468/1‑100 CCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCAACCGCCCATTATCAGGTTTATATGCTTG > 1:1781333/1‑100 CCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCAACCGCCCATTATCAGGTTTATATGCTTG > 2:479328/1‑100 CCGGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCAACCGCCCATTATCAGGTTTATATGCTTG < 1:1164161/100‑1 gGGATGTGGTTACGTCGCATCCGGTAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCTTTATCAGGTTAACCGCCCATTATCAGGTTTATATGCTTG < 1:3331287/98‑1 GGATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCAACCGCCCATTATCAGGTTTATATGCTTGTA < 2:2561982/100‑1 GATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCAACCGCCCATTATCAGGTTTATATGCTTGTAT < 1:2301367/100‑1 ATGTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCAACCGCCCATTATCAGGTTTATATGCTTGTATT < 1:3490949/100‑1 GTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCAACCGCCCATTATCAGGTTTATATGCTTGTATTAG > 2:1132163/1‑100 GTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCAACCGCCCATTATCAGGTTTATATGCTTGTATTAG > 1:998998/1‑100 AAAAGCTGCGTAACGCGCGCTAATACAAGCATATAAACCTGATAATGGGCGGTTGGCCTGATAAGGCGTTTACGCCGCATCAGGCCGCCAGCACCGATTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1145877‑1145983‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatgTGGTTACGTCGCATCCGGCAATCGGTGCTGGCGGCCTGATGCGGCGTAAACGCCTTATCAGGCCAACCGCCCATTATCAGGTTTATATGCTTGTATTAG < NC_000913/1145994‑1145896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |