New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3139625 =	NA (NA)	10 (0.080)	6/164	NT	NA	noncoding (5/83 nt)	REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	3139655 =	NA (NA)					noncoding (35/83 nt)	REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences

TACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3139728‑3139625 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGTG  >  NC_000913/3139655‑3139753                                                                                                                                                                                                             TACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATC                                                                                                         >  1:1230965/1‑100  ACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCC                                                                                                        >  2:3249826/1‑100  ACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCC                                                                                                        >  2:635936/1‑100  ACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCC                                                                                                        >  1:1991716/1‑100   CCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCCG                                                                                                       >  2:2791670/1‑100   CCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCCG                                                                                                       >  2:232419/1‑100   CCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCCG                                                                                                       >  2:3365954/1‑100   CCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATC                                                                                                         >  1:1585557/1‑98     ttccgatctTGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                     <  2:1081497/91‑1     AGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                     >  1:1773574/1‑100     AGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                     >  1:2938324/1‑100     AGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                     >  2:19446/1‑100     AGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                     <  2:848671/100‑1     AGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                     <  2:903762/100‑1      GCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGCA                                                                                                    <  1:2298165/100‑1        GCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGCAAT                                                                                                  <  1:3304796/100‑1              TGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCAgatcggaa                                                                                            >  1:1081490/1‑92                                                                    CACGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATC                                      >  1:1160800/1‑100                                                                     ACGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCA                                     >  2:2243560/1‑100                                                                       GATTGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAC                                    >  1:2407266/1‑99                                                                        ATTGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGC                                  >  2:3437995/1‑100                                                                        ATTGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGC                                  >  2:1789327/1‑100                                                                        ATTGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCAACACGC                                  >  1:2230303/1‑100                                                                          TGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGTGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGC                                >  2:1466641/1‑100                                                                          TGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGC                                >  1:124186/1‑100                                                                           GCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGCCGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCT                               >  2:359266/1‑100                                                                           GCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCT                               >  1:1153587/1‑100                                                                                                  ATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGC        >  2:345769/1‑100                                                                                                   TCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCG       >  1:3259424/1‑100                                                                                                     CGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCA     >  2:1349841/1‑100                                                                                                     CGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCA     >  2:656520/1‑100                                                                                                     CGGCAATCGTGCACAATGCCCGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTACTCCATTTGGCGCA     >  2:3340788/1‑100                                                                                                      GGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAG    >  1:3502496/1‑100                                                                                                      GGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAG    <  2:512930/100‑1                                                                                                        CAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGTG  <  2:2360390/100‑1                                                                                                        CAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGTG  <  1:454193/100‑1                                                                                                                                                                                                             TACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3139728‑3139625 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGTG  >  NC_000913/3139655‑3139753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.