| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4470387 | 116 (0.900) | 5 (0.040) | 4/164 | NT | 4.5% | noncoding (7/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470403 | 106 (0.900) | noncoding (23/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GGTGAAAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4470282‑4470387‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGCCAGCCGTAAC < NC_000913/4470403‑4470305 GGTGAAAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATGGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATG > 1:214617/1‑100GGTGAAAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATG > 2:640973/1‑100GGTGAAAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATG > 1:421968/1‑100GGTGAAAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATG > 2:2142821/1‑100GGTGAAAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACGGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATG > 1:3337834/1‑100 GTGAAAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGC > 2:767434/1‑100 TGAAAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCC > 1:9942/1‑100 GAAAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGCTTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCG > 1:303954/1‑100 AAAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGG < 2:856287/100‑1 AAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGA > 1:2882729/1‑100 AAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGA < 2:2724928/100‑1 AAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGA > 1:639056/1‑100 AGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGAT > 2:1986135/1‑100 GGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGG > 1:1210163/1‑96 CTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATAAGGCATTTACGCCGCATCCGGCA < 1:2125041/100‑1 GGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATAAGGCATTTACGCCGCATCCGGCATG < 1:496646/100‑1 GGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATAAGGCATTTACGCCGCATCCGGCATG < 2:3139885/100‑1 AATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATAAGGCATTTACGCCGCCTCCTGCATGAA < 1:1862540/99‑1 TTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGG < 2:2963838/100‑1 GCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGCCAGC > 2:2316993/1‑100 CCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGCCAGCC < 1:104414/100‑1 CCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGCCAGCC > 2:1784450/1‑100 CGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGCCAGCCG > 2:2296013/1‑100 GATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGCCAGCCGga > 2:237397/1‑98 GATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGCCAGCCGTA < 2:3340121/100‑1 TAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGCCAGCCGTAAC > 2:253373/1‑100 GGTGAAAGGGTTCTATAGCCGTCGTTACGGCTGGCAATAAAGAATAAACTGGGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4470282‑4470387‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTTTGTCTACAATCTGAATCGGGGCTATCGTGCCCAGTTTATTCTTTATTGCCAGCCGTAAC < NC_000913/4470403‑4470305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |