New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4569947 =	NA (NA)	10 (0.080)	6/166	NT	NA	noncoding (2/99 nt)	RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	4569970 =	NA (NA)					noncoding (25/99 nt)	RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

TGTTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4570051‑4569947 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAA  >  NC_000913/4569970‑4570068                                                                                                                                                                                                              TGTTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCA                                                                                                          <  1:1827397/100‑1  aTTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCAT                                                                                                         >  2:544974/2‑100   TTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATC                                                                                                        >  1:1171997/1‑100   TTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATC                                                                                                        <  1:1798800/100‑1     CATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAG                                                                                                      <  2:1533458/100‑1     CATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAG                                                                                                      >  1:2207154/1‑100     CATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAG                                                                                                      <  2:147642/100‑1                                                                        GGTTATGTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTCAAAGATTTTTGTAGACCTGGTCAGGCGTTCACA                                     >  1:2961099/1‑98                                                                             TGTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATCTATTGAACTATAAAGATTTTTGTAGAACTGGTCCGGCGTTCACATGACAT                               >  1:1402175/1‑99                                                                               TAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCG                            >  1:887602/1‑100                                                                               TAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCG                            >  2:1673055/1‑100                                                                                AGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGG                           >  1:336685/1‑100                                                                                AGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGG                           >  2:2431019/1‑100                                                                                AGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGG                           >  2:3272689/1‑100                                                                                 GACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGC                          >  1:3487740/1‑100                                                                                 GACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATATTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGC                          >  1:1683342/1‑100                                                                                   CCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAAGTTTAAAGATTTTTGTAGACCTGGTCAGGAGTTCACATAGCATCCGGCAT                        >  1:157968/1‑100                                                                                                    ATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTG       >  2:2515369/1‑100                                                                                                     TCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGAGTACTTTGC      <  2:1454701/100‑1                                                                                                      CAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCT     >  1:961478/1‑100                                                                                                       AGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTT    <  1:39933/100‑1                                                                                                        GGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTA   >  1:916442/1‑100                                                                                                        GGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTA   >  2:1690387/1‑100                                                                                                         GTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAA  <  2:1791315/100‑1                                                                                                                                                                                                              TGTTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4570051‑4569947 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAA  >  NC_000913/4569970‑4570068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.