| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3423822 | 0 (0.000) | 33 (0.280) | 9/166 | NT | 100% | intergenic (‑35/+58) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4040506 = | NA (NA) | intergenic (+83/‑11) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
ACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG > NC_000913/3423723‑3423921 | aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT < 2:1878026‑M1/100‑1 (MQ=255)aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT > 1:2632376‑M1/1‑100 (MQ=255)aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT < 1:1643634‑M1/100‑1 (MQ=255)aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT > 1:433656‑M1/1‑100 (MQ=255)aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT > 2:2959341‑M1/1‑100 (MQ=255)aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGAGACCACCGCGCTACGTCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT < 1:1684281‑M1/100‑1 (MQ=255) cGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT < 2:344881‑M1/99‑1 (MQ=255) tttCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACGACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGAACGCAGAAGCGGTCTGATaaaaca < 1:2093546‑M1/100‑7 (MQ=255) ttCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTCATCAGACCGCTTCTGCGTTCAGATcggaaga > 2:2438712‑M1/1‑93 (MQ=255) gccAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaa > 2:1917512‑M1/1‑43 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 2:2876438‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 2:2754056‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 1:2795243‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 2:2309708‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 1:2301360‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 2:2970751‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 2:2974472‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 1:836880‑M1/1‑31 (MQ=255) cTGTATTATCAGACCGCTTCTGCGTCCTTATaaaacagaatttgcctggcggcagtagcgcggtggtcctacctgaccccatgccgaactcagaagtgaa > 1:1782831‑M1/1‑31 (MQ=255) tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaa > 2:552966‑M1/1‑30 (MQ=255) tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 1:2575953‑M1/1‑30 (MQ=255) tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccacatgccgaactcagaagtga > 1:1120373‑M1/1‑30 (MQ=255) tGTTTCATCAGACCGCTTCTGCGTTCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaa > 2:2208921‑M1/1‑30 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 2:132045‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 2:2618256‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 2:212347‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 1:1626891‑M1/1‑29 (MQ=255) tttATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgc > 2:3150880‑M1/1‑27 (MQ=255) tttATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgc > 2:757364‑M1/1‑27 (MQ=255) tttATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgc > 2:2671764‑M1/1‑27 (MQ=255) ttcatcaGACCGCTTCTGCGTTCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgc > 2:1709018‑M1/4‑27 (MQ=255) ttATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgcc > 1:2634196‑M1/1‑26 (MQ=255) ttATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgcc > 2:2306086‑M1/1‑26 (MQ=255) tcatcAGACCGCTTCTGCGTTCTGATgaaacagcatttgcctggcggccgtagcgcggaggtcccacctgaccccatgccgaactcagaagtgaaacac > 1:1286177‑M1/3‑26 (MQ=255) tATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccg > 1:1012785‑M1/1‑25 (MQ=255) tATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccg > 1:71077‑M1/1‑25 (MQ=255) aGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagc > 1:2124051‑M1/1‑21 (MQ=255) gACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcg > 2:1353192‑M1/1‑20 (MQ=255) ccGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgcc < 1:1917502‑M1/100‑83 (MQ=255) cTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgat > 1:844823‑M1/1‑15 (MQ=255) cTTCTGCGGTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgat > 1:2463573‑M1/1‑15 (MQ=255) tCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtg < 2:817024‑M1/100‑95 (MQ=255) tCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtg < 1:2932373‑M1/100‑95 (MQ=255) tCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtg > 2:2943436‑M1/1‑6 (MQ=255) cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg > 2:302404‑M1/1‑5 (MQ=255) cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg > 1:959096‑M1/1‑5 (MQ=255) cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg < 1:3249882‑M1/100‑96 (MQ=255) cTGATaaaacacaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg < 1:1460025‑M1/100‑96 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg > 1:3551260‑M1/1‑4 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg < 2:2896226‑M1/100‑97 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg < 1:2772649‑M1/100‑97 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg > 2:2158906‑M1/1‑4 (MQ=255) tctaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:3017225‑M1/98‑98 (MQ=255) gATaaaacagagtgtgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:283326‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtggcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:262340‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagtgcggtggtcccacctgaccccaagccgaactcaaaagtgaaacgccgtagcgccgatggtagtgtgggg > 2:163092‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgcccccatgccgaactcagaagggaaacgccgtagcgccgatggtagcgtgggg > 1:1968630‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:370002‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:160503‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:3327959‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:372970‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 1:1800580‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:1427085‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 2:40092‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 2:314687‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:2236351‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 1:240659‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:1134794‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:1134518‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:2830941‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:2814556‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 1:832363‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:2198611‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 2:2158567‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccacatgccgaactcagaagtgaaacgccgtagcgccgatggtagagtgggg > 1:595406‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtaccacctgaccccatgccgaactcagaagtgaaacgccgtcgcgccgatggtagtgtgggg > 1:787444‑M1/1‑3 (MQ=255) aTaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggt > 1:1055174‑M1/1‑2 (MQ=255) aTaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggt > 1:3006727‑M1/1‑2 (MQ=255) aTaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggt > 1:1925326‑M1/1‑2 (MQ=255) aTaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:1012791‑M1/99‑98 (MQ=255) taaatcagagttggcctggcggcagtagcgcggtggtcccacctgtccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtc < 1:2765235‑M1/100‑100 (MQ=255) taaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtc > 2:3231709‑M1/1‑1 (MQ=255) taaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtc > 2:1458318‑M1/1‑1 (MQ=255) taaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtc > 2:664520‑M1/1‑1 (MQ=255) taaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtc > 1:2241650‑M1/1‑1 (MQ=255) | ACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG > NC_000913/3423723‑3423921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |