| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4541255 | 118 (0.920) | 11 (0.090) | 8/168 | NT | 8.8% | coding (299/603 nt) | fimB | tyrosine recombinase/inversion of on/off regulator of fimA |
| ? | NC_000913 | = 4541272 | 117 (0.970) | coding (316/603 nt) | fimB | tyrosine recombinase/inversion of on/off regulator of fimA | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
Only 100 of 169 total aligned reads displayed.
TATCCATCGATTAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCGG > NC_000913/4541157‑4541354 | cATCGATTAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATg > 2:2834857/1‑100 (MQ=255) aTCGATTAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATg < 1:1928945/99‑1 (MQ=255) aTCGATTAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGc > 2:3454228/1‑100 (MQ=255) cGATTAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTg < 2:162664/100‑1 (MQ=255) aatAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTg < 1:818307/96‑1 (MQ=255) aTTAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTgag > 1:1486917/1‑100 (MQ=255) aTTAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTgag > 2:1546992/1‑100 (MQ=255) ttAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTgaga < 2:140134/100‑1 (MQ=255) ttAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTg < 2:2927515/97‑1 (MQ=255) tAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGagag > 1:1170304/1‑100 (MQ=255) tAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGagag > 1:1845916/1‑100 (MQ=255) tAAAAAAAGGCTTTCCAACAAAGCACCCGCTATTGAATAAAGAAGAAAAAAAAAAAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGagag < 1:3219129/100‑1 (MQ=255) aaaaaaaGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGc > 2:3448258/1‑100 (MQ=255) aaGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTg > 2:1884979‑M2/1‑99 (MQ=255) aaGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTg > 1:3129926‑M2/1‑99 (MQ=255) aaGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTg > 1:2079992‑M2/1‑99 (MQ=255) aaGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTg > 2:2693634‑M2/1‑99 (MQ=255) aaGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTg > 1:1969714‑M2/1‑99 (MQ=255) ggCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTggg < 2:423452‑M2/100‑4 (MQ=255) ggCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTggg > 1:2834839‑M2/1‑97 (MQ=255) ttttCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTAt > 1:458745/1‑100 (MQ=255) ttttCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTAGAGTATCCGTACTTCGTACCCGCAAGCTGAGAGCGAGTggg < 1:2880882‑M2/97‑4 (MQ=255) tttCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTAtt > 2:1233831/1‑100 (MQ=255) ttCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTAttt > 1:916714/1‑100 (MQ=255) caacaaCGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCactcgctctcagcatgcgggtacgaag < 1:1022933‑M1/100‑28 (MQ=255) caacaaCGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCactcgctctcagcatgcgggtacgaag < 2:303768‑M1/100‑28 (MQ=255) caacaaCGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGAATGCTGAGAGCGAGTGGGTAtttt > 1:259874/1‑99 (MQ=255) aacaacGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCactcgctctcagcatgcgggtacgaagt < 2:352633‑M1/100‑29 (MQ=255) aacaacGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCactcgctctcagcatgcgggtacgaagt < 1:312550‑M1/100‑29 (MQ=255) aacaacGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCactcgctctcagcatgcgggtacgaagt < 2:1055954‑M1/100‑29 (MQ=255) aacaacGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTa > 1:2821366/1‑100 (MQ=255) aacaacGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTa < 2:175288/100‑1 (MQ=255) acaacGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCTGTACTTCGTATCCGCATGCTGAGAGCGAGTGGGTAttttttt < 2:2396774/100‑3 (MQ=255) acaacGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTAt > 2:748718/1‑100 (MQ=255) acaacGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTAt > 2:458408/1‑100 (MQ=255) caacGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATc < 1:1475349/100‑1 (MQ=255) caacGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATc < 1:188138/100‑1 (MQ=255) cACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTa > 2:94655/1‑100 (MQ=255) cccGCTATTGAATAAAGAAGTTCAGGCTTTAAAAATCTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCAc < 2:1731391/95‑1 (MQ=255) ccGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCactcgctctcagcatgcgggtacgaagtacggatactc < 1:1298191‑M1/100‑39 (MQ=255) ccGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTa < 1:3406916/97‑1 (MQ=255) cGCTATTGAATAAAGAATTTCACGCTTTAAAAAACTGTTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCTAGTGGGTATTTTTATCACGTAAggg < 1:2404130/100‑1 (MQ=255) gCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAgggg < 2:551803/100‑1 (MQ=255) aTTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAAt > 2:2039005/1‑100 (MQ=255) ttGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATc < 1:639199/100‑1 (MQ=255) gAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCg > 1:2081776/1‑100 (MQ=255) tAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCtt > 2:3074125/1‑100 (MQ=255) naaaGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCtt > 2:3207095/2‑100 (MQ=255) aagaagTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTtc > 1:85819/1‑100 (MQ=255) agaagTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTtct > 2:1388311/1‑100 (MQ=255) gaagTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTtctc < 2:845440/100‑1 (MQ=255) gaagTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTtctc < 1:300003/100‑1 (MQ=255) aagTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCg < 2:2230258/100‑1 (MQ=255) gTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGc < 2:920686/100‑1 (MQ=255) ttCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCa > 1:2515367/1‑100 (MQ=255) ggCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAg < 2:3021009/100‑1 (MQ=255) ggCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAg > 2:484729/1‑100 (MQ=255) ggCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAg > 1:267175/1‑100 (MQ=255) ggCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAg > 2:824523/1‑100 (MQ=255) ggCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAg > 1:2078049/1‑100 (MQ=255) gCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGt > 2:2182963/1‑100 (MQ=255) gCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGt > 2:2183069/1‑100 (MQ=255) cTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGtt > 2:2153499/1‑100 (MQ=255) tttAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGttt > 2:682217/1‑100 (MQ=255) ttAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGtttt > 1:1335507/1‑100 (MQ=255) aaaaaaCTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTAc < 2:1868313/100‑1 (MQ=255) aaaaaCTGGTTGCGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTAcc < 2:13330/100‑1 (MQ=255) aaaaaCTGGTTGAGTATCCGTACTTCGTACCCactcgctctcagcatgcgggtacgaagtacggatactcaaccagttttttaaagcctgaacttcttta < 1:444612‑M1/100‑69 (MQ=255) aaaaCTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCa < 1:43336/100‑1 (MQ=255) cTGGTCGAGCATCCGTACTTCATCCCCGCATGCTGAGAGCGAGTGGGTTTTTTTATCCCGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCatat < 1:51495/99‑1 (MQ=255) gTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCAGCTTTCTCGGCAACAGTTTTAACATATTAtc > 2:2966137/1‑100 (MQ=255) tGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTAtctc > 1:831234/1‑100 (MQ=255) gAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTgggtacgaagtacggatactcaaccagttttttaaagcctgaacttctttattcaatagcgg < 1:1298191‑M2/100‑63 (MQ=255) gAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCg > 1:2197239/1‑100 (MQ=255) aGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCg < 1:235964/99‑1 (MQ=255) gTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGAc < 2:318662/100‑1 (MQ=255) tATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACt < 2:502552/100‑1 (MQ=255) ntCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACtt > 1:2770596/2‑100 (MQ=255) tCCGTACTTCGTACCCGCATGCTGAGAGCGAGTgggtacgaagtacggatactcaaccagttttttaaagcctgaacttctttattcaatagcgggtgcg < 2:507551‑M2/100‑68 (MQ=255) tCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTc > 2:3238316/1‑100 (MQ=255) cGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCg > 2:2605859/1‑100 (MQ=255) cGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCg > 1:1993628/1‑100 (MQ=255) gTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCgg > 2:2656854/1‑100 (MQ=255) aCTTCGTACCCGCATGCTGAGAGCGAGTgggtacgaagtacggatactcaaccagttttttaaagcctgaacttctttattcaatagcgggtgcgttgtt < 2:1055954‑M2/100‑73 (MQ=255) cTTCGTACCCGCATGCTGAGAGCGAGTgggtacgaagtacggatactcaaccagttttttaaagcctgaacttctttattcaatagcgggtgcgttgttg < 1:1022933‑M2/100‑74 (MQ=255) cTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCggtgg < 2:1165102/100‑1 (MQ=255) ttagTACCCGCATGTTGAGAGCGAGTGCGTATTGTTACCCCGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCggtgg < 1:3251983/96‑1 (MQ=255) ttCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCggtggt > 1:51224/1‑100 (MQ=255) tCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTa < 2:3546921/100‑1 (MQ=255) cGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTaa < 1:3009308/100‑1 (MQ=255) gTACCCGCATGCTGAGAGCGAGTgggtacgaagtacggatactcaaccagttttttaaagcctgaacttctttattcaatagcgggtgcgttgttgaaaa < 1:1999439‑M2/100‑78 (MQ=255) tACCCGCATGCTGAGAGCGAGTgggtacgaagtacggatactcaaccagttttttaaagcctgaacttctttattcaatagcgggtgcgttgttgaaaag < 1:1990904‑M2/100‑79 (MQ=255) tACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATg < 2:2744641/100‑1 (MQ=255) aCCCactcgctctcagcatgcgggtacgaagtacggatactcaaccagttttttaaagcctgaacttctttattcaatagcgggtgcgttgttgaaaag < 1:2392147‑M1/99‑96 (MQ=255) cccactcgctctcagcatgcgggtacgaagtacggatactcaaccagttttttaaagcctgaacttctttattcaatagcgggtgcgttgttgaaaagcc < 2:423452‑M1/100‑98 (MQ=255) cccGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGcc > 2:1290483/1‑100 (MQ=255) ccactcgctctcagcatgcgggtacgaagtacggatactcaaccagttttttaaagcctgaacttctttattcaatagcgggtgcgttgttgaaaagcct > 2:2933258‑M1/1‑2 (MQ=255) cactcgctctcagcatgcgggtacgaagtacggatactcaaccagttttttaaagcctgaacttctttattcaatagcgggtgcgttgttgaaaagcctt > 2:2693634‑M1/1‑1 (MQ=255) cactcgctctcagcatgcgggtacgaagtacggatactcaaccagttttttaaagcctgaacttctttattcaatagcgggtgcgttgttgaaaagcctt > 1:3129926‑M1/1‑1 (MQ=255) cGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCgg > 1:3174316/1‑100 (MQ=255) | TATCCATCGATTAAAAAAAGGCTTTTCAACAACGCACCCGCTATTGAATAAAGAAGTTCAGGCTTTAAAAAACTGGTTGAGTATCCGTACTTCGTACCCGCATGCTGAGAGCGAGTGGGTATTTTTATCACGTAAGGGGAATCCGCTTTCTCGGCAACAGTTTTACCATATTATCTCGACTTCCGGTGGTAATGCCGG > NC_000913/4541157‑4541354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |