New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3277819 =NA (NA)12 (0.100) 9/162 NT NA noncoding (1/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3277844 = NA (NA)noncoding (26/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 195 total aligned reads displayed.

GGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCATG  >  NC_000913/3277745‑3277943
                                                                                                   |                                                                                                   
ctgcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccgctggtcaacacgaatgcgttcggcg                                                                                                     >  2:1656813‑M2/100‑100 (MQ=255)
ctgcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccgctggtcaacacgaatgcgttcggcg                                                                                                     >  2:1013302‑M2/100‑100 (MQ=255)
 tgcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccgctggtcaacacgaatgcgttcggcgg                                                                                                    <  1:999457‑M2/2‑1 (MQ=255)
 tgcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccgctggtcaacacgaatgcgttcggcg                                                                                                     <  1:1550373‑M2/1‑1 (MQ=255)
 gACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCgg                                                                                                    <  1:2992144/100‑1 (MQ=255)
  gcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccgctggtcaacacgaatgcgttcggcggg                                                                                                   <  2:511325‑M2/3‑1 (MQ=255)
  gcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCggg                                                                                                   >  2:2089455‑M1/73‑100 (MQ=255)
  aCATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCggg                                                                                                   >  2:2171789/1‑100 (MQ=255)
   cATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGc                                                                                                  <  2:2329064/100‑1 (MQ=255)
     tcctccTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCAt                                                                                                >  1:2268402/1‑100 (MQ=255)
     tcctccTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCCGGCAt                                                                                                >  1:2865009/1‑100 (MQ=255)
      cctccgGCCGTCTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGTTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATc                                                                                               <  2:1181757/100‑1 (MQ=255)
        agcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCt                                                                                             >  2:911518‑M1/67‑100 (MQ=255)
            tggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtct                                                                                         >  1:1039950‑M1/63‑100 (MQ=255)
            tggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtct                                                                                         >  1:1094950‑M1/63‑100 (MQ=255)
             ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                                                        <  1:2177315/100‑1 (MQ=255)
             ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                                                        <  2:3054827/100‑1 (MQ=255)
              cGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCa                                                                                       >  2:1629119/1‑100 (MQ=255)
              cGACTGGGAAACCCGCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCa                                                                                       <  1:192650/100‑1 (MQ=255)
                aCTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACt                                                                                     <  2:2381486/100‑1 (MQ=255)
                 cTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTc                                                                                    >  1:45585/1‑100 (MQ=255)
                 cTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTc                                                                                    <  2:1126373/100‑1 (MQ=255)
                  gactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcc                                                                                   >  2:593507‑M1/57‑100 (MQ=255)
                   gggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTccc                                                                                  >  2:59930/1‑100 (MQ=255)
                   gggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTccc                                                                                  >  2:1615880/1‑100 (MQ=255)
                   ggaaaaCCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGGTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCAAGCACCCCTTCTCAcgc                                                                                    >  1:620194/4‑96 (MQ=255)
                    ggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcccc                                                                                 <  2:1875550/100‑1 (MQ=255)
                    ggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcccc                                                                                 >  2:771035/1‑100 (MQ=255)
                    ggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcccc                                                                                 >  1:387623/1‑100 (MQ=255)
                    ggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcccc                                                                                 >  2:333925/1‑100 (MQ=255)
                     tgatcccTCTCCCGATTCAGAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCtt                                                                                            <  1:2905641/84‑1 (MQ=255)
                      aaaCCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGa                                                                               <  1:2039578/100‑1 (MQ=255)
                        aCCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGAcc                                                                             <  1:247078/100‑1 (MQ=255)
                         cccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGAccn                                                                            <  1:3028265/100‑2 (MQ=255)
                         cccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCa                                                                            >  2:2104429/1‑100 (MQ=255)
                         cccTCACCCGAGAAACAGAAGAAACCCACTGATACTTTTCACAATGCCCGCCGAACGCATTTTTGTTGACCAGCGTGCATCCTTTCTCACACCCCAACCa                                                                            >  1:523381/1‑100 (MQ=255)
                          ccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAg                                                                           >  1:118141/1‑100 (MQ=255)
                          ccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAg                                                                           <  2:2805840/100‑1 (MQ=255)
                            tCACCCGAGAGACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCACCGGGCATCCTTTCTCACTCCCCGACCAGaa                                                                         <  1:2340960/100‑1 (MQ=255)
                               cccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCa                                                                      <  2:1696609/100‑1 (MQ=255)
                                ccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCAc                                                                     >  2:266034/1‑100 (MQ=255)
                                 cGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACt                                                                    <  1:3148221/100‑1 (MQ=255)
                                 cGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACt                                                                    >  1:927718/1‑100 (MQ=255)
                                  gagaAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACtt                                                                   >  1:745659/1‑100 (MQ=255)
                                    gaAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCa                                                                 <  1:1475102/100‑1 (MQ=255)
                                      aaCAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCagc                                                               >  2:1833661/1‑98 (MQ=255)
                                      aaCAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAc                                                               <  1:1591700/100‑1 (MQ=255)
                                        cAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAccc                                                             >  2:726071/1‑100 (MQ=255)
                                          gaagaaACCCATTGATTGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCa                                                           >  1:2790050/1‑100 (MQ=255)
                                           aagtaATCCTTTGGTGGCGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCGGCGGCCATCCTTTCGCACTCCCCGACCAGAATCACTTCATCCCCa                                                           <  1:3207638/99‑1 (MQ=255)
                                           aagaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAg                                                          >  1:1053877/1‑100 (MQ=255)
                                                 cccATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTc                                                    >  2:953262/1‑100 (MQ=255)
                                                 cccATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTc                                                    >  1:1735206/1‑100 (MQ=255)
                                                 cccATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGAGGGCATCCTTTCTCACTCCCCGACCAGACTCACTTCAACCCCAGCCTTTc                                                    >  1:2130980/1‑100 (MQ=255)
                                                  ccATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCg                                                   >  2:3150348/1‑100 (MQ=255)
                                                  ccATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCg                                                   <  1:2566930/100‑1 (MQ=255)
                                                   cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                                                  <  2:2284675/100‑1 (MQ=255)
                                                   cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                                                  >  2:2845106/1‑100 (MQ=255)
                                                   cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                                                  <  1:3334090/100‑1 (MQ=255)
                                                   cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                                                  <  2:456205/100‑1 (MQ=255)
                                                   cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                                                  <  1:2737498/100‑1 (MQ=255)
                                                     ttGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGAGGGAATCCCTTCTCACTGCCCGACCAGAATCACTTCAACCCCAGCCTTTCGAAg                                                >  1:48380/1‑100 (MQ=255)
                                                        aTGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTcc                                             <  1:762997/100‑1 (MQ=255)
                                                          ggTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCtt                                           >  1:1200467/1‑100 (MQ=255)
                                                           gtgtTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTc                                          >  1:3254538/1‑100 (MQ=255)
                                                             agaaaggatgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCa                                        >  1:1039950‑M2/39‑100 (MQ=255)
                                                              ttCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAg                                       <  1:834097/100‑1 (MQ=255)
                                                              gaaaggatgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAg                                       >  2:2068592‑M2/38‑100 (MQ=255)
                                                               tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg                                      >  2:484192/1‑100 (MQ=255)
                                                               tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg                                      >  2:2717910/1‑100 (MQ=255)
                                                               tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg                                      <  1:308284/100‑1 (MQ=255)
                                                                  ggatgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTGTCACTACCCGACCAGAATGACTTCAACCCCAGCCTTTGGCAGTCCTTCCAGGCTa                                   >  1:3532481‑M2/34‑100 (MQ=255)
                                                                  caATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTa                                   >  2:1550013/1‑100 (MQ=255)
                                                                   gatgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCt                                    >  1:3294426‑M2/33‑98 (MQ=255)
                                                                   gatgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTAt                                  >  1:982447‑M2/33‑100 (MQ=255)
                                                                   gatgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTAt                                  >  2:2899404‑M2/33‑100 (MQ=255)
                                                                     tgcccgctggtcaacacgaatgcgttcggcGGGCCTCCTTTCTCAATCCCCGACCAGAATCAATTCACACACAGCCTTTCGCAGTCCTTCCAGGCtatac                                >  1:3292582‑M2/31‑98 (MQ=255)
                                                                      gcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGACTCACTTCAACCCCGGCCTTTCGCAGTCCTTCCAGGCTATCCg                               >  1:3007057‑M2/30‑100 (MQ=255)
                                                                      gcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCg                               <  2:1868307‑M1/96‑1 (MQ=255)
                                                                          GCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAgg                           >  2:1050726‑M1/1‑100 (MQ=255)
                                                                          GCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAgg                           >  2:2800034‑M1/1‑100 (MQ=255)
                                                                                 gCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCt                    <  1:1762860/100‑1 (MQ=255)
                                                                                 gCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCt                    >  1:869799/1‑100 (MQ=255)
                                                                                    ttCGTGTTGACCAGCTGGCATCCTTTCTCACGCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTtca                 <  2:1374844/100‑1 (MQ=255)
                                                                                        tgtTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATcaa             >  1:892582/1‑100 (MQ=255)
                                                                                        tgtTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATcaa             >  2:1947610/1‑100 (MQ=255)
                                                                                         gtTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATcaac            >  2:858625/1‑100 (MQ=255)
                                                                                         gtTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATcaac            <  1:1115395/100‑1 (MQ=255)
                                                                                          ttGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATcaaca           <  2:2451735/100‑1 (MQ=255)
                                                                                             aCCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATg        >  2:3512491/1‑100 (MQ=255)
                                                                                             aCCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATg        <  1:2634312/100‑1 (MQ=255)
                                                                                             aCCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATg        <  2:1735214/100‑1 (MQ=255)
                                                                                              ccAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGa       >  1:963301/1‑100 (MQ=255)
                                                                                              ccAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCACAGGAATGCCTTCATCAACAATGa       >  2:921780/1‑100 (MQ=255)
                                                                                              ccAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACGTCAACCCCAGCCTTGCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGa       >  1:1182352/1‑100 (MQ=255)
                                                                                               cAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGAt      <  2:3268615/100‑1 (MQ=255)
                                                                                                aGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATc     <  1:656636/100‑1 (MQ=255)
                                                                                                aGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATc     >  2:1298730/1‑100 (MQ=255)
                                                                                                 gcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCa    <  2:2264237‑M2/98‑1 (MQ=255)
                                                                                                   GGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCATg  <  1:340289‑M2/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCATG  >  NC_000913/3277745‑3277943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.