BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp	100%		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	119 [0]	[2] 121	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	104 (0.890)	65/162	NT	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913	1979279 =	0 (0.000)	104 (0.890)	65/162	NT	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 121 total aligned reads displayed.

ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG  >  NC_000913/1979183‑1979377

actcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                 <  2:770480‑M2/4‑1 (MQ=255)

 ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                >  1:3351951‑M2/96‑100 (MQ=255)

 ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                >  1:110199‑M2/96‑100 (MQ=255)

 ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                >  2:2568620‑M2/96‑100 (MQ=255)

  tcgtcactacactcacatacaacagaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                 <  1:1835001‑M2/4‑1 (MQ=255)

   cgtcactacacgcacatacaacggaagagggctgcgattttcaataatgtgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                              <  1:228127‑M2/7‑1 (MQ=255)

          acacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtt                                                                                       >  1:1683622‑M2/87‑100 (MQ=255)

          acacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgaagatcacagaaaacactcaaatacttaacataaatgTATAAGTCATACtt                                                                                       >  2:1113897‑M2/87‑100 (MQ=255)

          acacgcacatacaacggaggggggctgcgattttcaataatgcgaaaagcagatcacccaaaacactcaattacttaacataaatgTATAAGTCataat                                                                                        >  1:2652469‑M2/87‑97 (MQ=255)

             cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                    >  1:3134488‑M2/84‑100 (MQ=255)

             cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                    <  1:378999‑M2/17‑1 (MQ=255)

               cacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                  >  2:532351‑M2/82‑100 (MQ=255)

                acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt                                                                                 >  1:803060‑M2/81‑100 (MQ=255)

                 catacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtttt                                                                                >  2:2001893‑M2/80‑100 (MQ=255)

                  atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTAATACttttgttttg                                                                               >  1:1066589‑M2/79‑100 (MQ=255)

                   tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                              <  2:1137574‑M2/23‑1 (MQ=255)

                   tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                              <  1:2761337‑M2/23‑1 (MQ=255)

                   tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                              <  2:904450‑M2/23‑1 (MQ=255)

                   tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                              >  2:1815725‑M2/78‑100 (MQ=255)

                   tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                              <  1:1450927‑M2/23‑1 (MQ=255)

                   tacaacggaggggggctgcgatcttcaataacgcgtgctgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                              <  1:2401922‑M2/23‑1 (MQ=255)

                    acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                             <  1:1830481‑M2/24‑1 (MQ=255)

                    acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                             <  1:348616‑M2/24‑1 (MQ=255)

                    acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                             >  1:608106‑M2/77‑100 (MQ=255)

                    acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                             <  1:892768‑M2/24‑1 (MQ=255)

                    acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                             >  2:1713320‑M2/77‑100 (MQ=255)

                     caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                            >  1:2721803‑M2/76‑100 (MQ=255)

                     caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                            >  1:3377052‑M2/76‑100 (MQ=255)

                     caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                            >  2:3308464‑M2/76‑100 (MQ=255)

                      aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtg                                                                           <  2:618194‑M2/26‑1 (MQ=255)

                       acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtgt                                                                          >  1:247801‑M2/74‑100 (MQ=255)

                       acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtgt                                                                          >  2:2747800‑M2/74‑100 (MQ=255)

                        cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTa                                                                         <  2:2332570‑M2/28‑1 (MQ=255)

                          gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                       <  2:1705928‑M2/30‑1 (MQ=255)

                          gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                       >  1:90975‑M2/71‑100 (MQ=255)

                            ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTc                                                                     <  1:3131003‑M2/32‑1 (MQ=255)

                              ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                   >  2:1884074‑M2/67‑100 (MQ=255)

                              ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                   <  1:2635645‑M2/34‑1 (MQ=255)

                              ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                   >  1:767138‑M2/67‑100 (MQ=255)

                                 gctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                <  1:2609969‑M2/37‑1 (MQ=255)

                                  ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTg                                                               <  2:2735776‑M2/38‑1 (MQ=255)

                                   tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacgtaaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                              <  2:1461070‑M2/39‑1 (MQ=255)

                                    gcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                             >  2:2447161‑M2/61‑100 (MQ=255)

                                    gcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                             <  2:1683630‑M2/40‑1 (MQ=255)

                                    gcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                             <  2:2648797‑M2/40‑1 (MQ=255)

                                      gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaa                                                           <  2:3107865‑M2/42‑1 (MQ=255)

                                        ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTCAATCTGTTaaaa                                                         >  1:550754‑M2/57‑100 (MQ=255)

                                        ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                         <  1:2747783‑M2/44‑1 (MQ=255)

                                        ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                         >  2:1436233‑M2/57‑100 (MQ=255)

                                          ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                       <  2:637952‑M2/46‑1 (MQ=255)

                                          ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                       <  1:2568603‑M2/46‑1 (MQ=255)

                                            caataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt                                                     >  1:1545798‑M2/53‑100 (MQ=255)

                                            caataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt                                                     <  1:2671938‑M2/48‑1 (MQ=255)

                                             aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                    <  2:688162‑M2/49‑1 (MQ=255)

                                                 atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                <  1:3001805‑M2/53‑1 (MQ=255)

                                                 atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                >  2:2327848‑M2/48‑100 (MQ=255)

                                                  tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                                               >  2:1706842‑M2/47‑100 (MQ=255)

                                                    cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                             <  1:183467‑M2/56‑1 (MQ=255)

                                                    cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                             >  2:373319‑M2/45‑100 (MQ=255)

                                                    cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                             <  1:37301‑M2/56‑1 (MQ=255)

                                                     gtgatgcagatcacacaaaactctcaattacttaacatagatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                             <  1:940605‑M2/56‑1 (MQ=255)

                                                       gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                          >  2:1393618‑M2/42‑100 (MQ=255)

                                                       gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                          >  2:1393780‑M2/42‑100 (MQ=255)

                                                       gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                          <  1:3525747‑M2/59‑1 (MQ=255)

                                                        atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                         <  2:2248471‑M2/60‑1 (MQ=255)

                                                         tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                        >  2:1709328‑M2/40‑100 (MQ=255)

                                                          gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag                                       <  1:1002734‑M2/62‑1 (MQ=255)

                                                           cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                      <  1:1816025‑M2/63‑1 (MQ=255)

                                                            agatcacacaaaacactcaattacttaacatacatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                     >  2:3366687‑M2/37‑100 (MQ=255)

                                                            agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                     >  2:3224961‑M2/37‑100 (MQ=255)

                                                            agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                     >  2:2459130‑M2/37‑100 (MQ=255)

                                                            agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                     >  1:622187‑M2/37‑100 (MQ=255)

                                                              ntcacacaaaacacgcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGCGTATTTTAATCTGTTAAAAAGttttttgctacgctatctag                                   >  1:889064‑M2/35‑95 (MQ=255)

                                                                 acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                                <  2:918826‑M2/69‑1 (MQ=255)

                                                                  cacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaa                               >  2:1151227‑M2/31‑100 (MQ=255)

                                                                   acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                              <  1:2927406‑M2/71‑1 (MQ=255)

                                                                    caaaacactcaattacttaacataaatgTATAAGACATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTTGCTACGCTAGTAAGTaaaa                              >  1:2840216‑M2/29‑99 (MQ=255)

                                                                     aaaacactcaattacttaacataaattTATAAGTCACACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGGTTTCCGCTACGCTAGCAAGCAAAAAt                            <  1:3154758‑M2/73‑1 (MQ=255)

                                                                     aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTATTCTATCAAGCAAAAAt                            >  1:1642158‑M2/28‑100 (MQ=255)

                                                                        acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                         <  2:2329794‑M2/76‑1 (MQ=255)

                                                                          actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                       <  2:3003117‑M2/78‑1 (MQ=255)

                                                                           ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGTTGTATTTTTATTTGTTAAAAAGTTTTTCGCTACGCTATCAAGCAAATATGAAACa                      >  1:3401232‑M2/22‑100 (MQ=255)

                                                                           ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGTTGTATATCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                      >  1:2455658‑M2/22‑100 (MQ=255)

                                                                           ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                        >  1:3339516‑M2/22‑98 (MQ=255)

                                                                             caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                    >  1:1061400‑M2/20‑100 (MQ=255)

                                                                             caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                    <  1:1519992‑M2/81‑1 (MQ=255)

                                                                             caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                    <  2:592453‑M2/81‑1 (MQ=255)

                                                                             caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                    >  2:3507200‑M2/20‑100 (MQ=255)

                                                                             caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                    >  2:1224474‑M2/20‑100 (MQ=255)

                                                                             caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAACAAAAATGAAACAgg                    >  2:3504124‑M2/20‑100 (MQ=255)

                                                                                   cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat              >  2:3111727‑M2/14‑100 (MQ=255)

                                                                                    ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc             >  2:1182434‑M2/13‑100 (MQ=255)

                                                                                    ttaacATAAATGTATAACTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAAAAAAAAAAAAAAAAATGAAACAGGAATAATc             <  1:1852176/96‑1 (MQ=255)

                                                                                     taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg            <  2:1962298‑M2/89‑1 (MQ=255)

                                                                                       acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa          >  2:3176729‑M2/10‑100 (MQ=255)

                                                                                          taaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg       <  1:2414398‑M2/94‑1 (MQ=255)

                                                                                               gTATTAGTCATACTTTTGTTTTGTGTGTATTTCAAGATGTTAAAAAGGTGTTCGGGGCGCAAGCAAGCAAAAATGAAATTGGTATAATCGAAATGGGAt   <  1:1070453/99‑1 (MQ=255)

                                                                                               gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg  >  1:84502‑M2/2‑100 (MQ=255)

                                                                                               gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg  <  2:780690‑M2/99‑1 (MQ=255)

                                                                                                tataAGTCATACTTTTGTTTTGTGTGTATTTCAATCTGATAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATTGGATg  <  1:3344399/99‑1 (MQ=255)

ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG  >  NC_000913/1979183‑1979377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`