Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3423823–3424234	3424623–3424238	5–801	85 [0]	[81] 83	[rrlD]	[rrlD]

CTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCACGGGGTC  >  NC_000913/3424556‑3424723                                                                     |                                                                                                     cTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAg                                                                       <  2:2926569/100‑1 (MQ=32)   gTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTGCAAGGAAGGCTCCATGCAGACTGGCGGCCACACTTCTAAGcc                                                                     >  1:822988/1‑100 (MQ=11)     ccGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTc                                                                   <  2:1923221/100‑1 (MQ=33)       gCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTccc                                                                 <  1:985944/100‑1 (MQ=33)         aaCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCAc                                                               <  2:2530287/100‑1 (MQ=33)          tcccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCAcc                                                              <  1:3507166/99‑1 (MQ=18)          aCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCAcc                                                              <  1:62396/100‑1 (MQ=33)           cccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCAcca                                                             >  2:3507192/1‑99 (MQ=18)            ccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑Ta                                                           >  2:2591551/1‑100 (MQ=33)            ccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑Ta                                                           <  2:1420391/100‑1 (MQ=33)            ccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑Ta                                                           <  2:641125/100‑1 (MQ=33)             cGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TAt                                                          <  2:84340/100‑1 (MQ=33)              ggATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGGCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATc                                                         >  1:2436022/1‑100 (MQ=17)               gATTACGGGTCAACGTTAGAACATCAAACATTAAATGGTGGTATTTCAAGGTCGGCTCCATGCATACTGGCGTCCACACTTCTAAGCCTCCCACC‑TAt                                                          <  2:1181965/98‑1 (MQ=16)                aTTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCt                                                       >  1:296577/1‑100 (MQ=33)                  tACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTac                                                     <  2:1331440/100‑1 (MQ=32)                  tACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTac                                                     <  2:2973948/100‑1 (MQ=33)                  tACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTac                                                     <  1:2166825/100‑1 (MQ=32)                  tACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTac                                                     <  2:516111/100‑1 (MQ=33)                   aCGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTaca                                                    <  2:1162283/100‑1 (MQ=33)                   aCGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTaca                                                    <  2:3161498/100‑1 (MQ=33)                    cGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTacac                                                   <  2:2615572/100‑1 (MQ=33)                    cGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTacac                                                   >  1:2014671/1‑100 (MQ=33)                    cGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTacac                                                   <  2:2282420/100‑1 (MQ=33)                    cGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTacac                                                   <  2:306348/100‑1 (MQ=33)                     gggTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTacac                                                   <  2:872051/99‑1 (MQ=32)                      ggTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACAt                                                 >  1:756071/1‑100 (MQ=33)                         cAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCaa                                              >  1:3198441/1‑100 (MQ=33)                          aaCGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAg                                             >  1:2562102/1‑100 (MQ=33)                           aCGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAgg                                            <  2:3124658/100‑1 (MQ=32)                           aCGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAgg                                            >  2:3548775/1‑100 (MQ=33)                           aCGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAgg                                            <  2:3441934/100‑1 (MQ=33)                           aCGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAgg                                            >  2:3548627/1‑100 (MQ=33)                            cGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGc                                           >  2:2089682/1‑100 (MQ=32)                            cGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGc                                           <  2:2045983/100‑1 (MQ=33)                              ttAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTc                                         >  2:2957486/1‑100 (MQ=33)                                 gagcATCACACATTAAAGGGTGGTATTGCAAGGTAGACTCTATGCAGACGGGCGTACACACTTCTAAGCCTTCCACC‑AATCCTACACACCAAGGCTCa                                        >  1:880817/4‑98 (MQ=11)                                 gAACATCAAACATTACAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTTGCGTCCA‑AAGGATAAGGCCACCACCGTGACCTACACATCAAGGCTCa                                        <  1:2523659/98‑1 (MQ=0)                                 gAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAAt                                      >  2:2757225/1‑100 (MQ=33)                                 gAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAAt                                      >  1:2805805/1‑100 (MQ=33)                                     aTCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTc                                  >  2:2448087/1‑100 (MQ=33)                                     aTCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTc                                  >  2:2732023/1‑100 (MQ=33)                                      tCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCa                                 <  2:453390/100‑1 (MQ=33)                                       cAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAGGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCa                                 >  1:517561/1‑99 (MQ=17)                                       cAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCa                                 >  1:3351985/1‑99 (MQ=32)                                       cAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAg                                <  1:3149748/100‑1 (MQ=32)                                       cAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTATAAGCCTCCCACA‑TATCCTACACATCAAGGCTCAATGTTCa                                 >  1:3312272/1‑99 (MQ=12)                                        aaaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAgt                               <  2:2623536/100‑1 (MQ=33)                                        aaaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAgt                               >  1:2313027/1‑100 (MQ=33)                                        aaaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAgt                               >  2:2612195/1‑100 (MQ=33)                                        aaaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAgt                               >  1:200175/1‑100 (MQ=33)                                         aaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAgtg                              <  1:1801460/100‑1 (MQ=32)                                           cATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTc                            >  1:3497852/1‑100 (MQ=32)                                            aTTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCa                           >  2:926924/1‑100 (MQ=33)                                             ttAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCaa                          >  2:2110938/1‑100 (MQ=33)                                               aaaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGc                        <  2:2056156/100‑1 (MQ=32)                                               aaaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGc                        <  2:570711/100‑1 (MQ=33)                                               aaaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGc                        >  2:3414028/1‑100 (MQ=33)                                               aaaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGc                        >  2:1112214/1‑100 (MQ=32)                                                 aGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCta                      <  2:1464838/100‑1 (MQ=33)                                                  gggTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCtat                     <  1:3548600/100‑1 (MQ=33)                                                  gggTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCtat                     <  1:3548748/100‑1 (MQ=33)                                                   ggtggtATTTCAAGGTCGGCTCCATGCAGACTTGTGTTTAAATGTTTAAGCCTCCAACC‑TAATCTACACATCAAGGCTCAATGTTCAGTGTCAAGCtata                    <  1:283103/100‑1 (MQ=11)                                                   ggtggtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TCTCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCtata                    >  1:800890/1‑100 (MQ=18)                                                   ggtggtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCtata                    <  2:1026205/100‑1 (MQ=33)                                                    gtggtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAg                   <  2:2815651/100‑1 (MQ=32)                                                      ggtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTa                 >  1:44503/1‑100 (MQ=32)                                                       gtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTTTAAGCCACCCACC‑TAACCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTa                 <  1:1688692/99‑1 (MQ=255)                                                         aTTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAg              <  2:2976419/100‑1 (MQ=33)                                                          tttCAAGGTCGGCTCCATGCAGACTTGCGTTCACACGTCTAAGCCACCCCCC‑AAACCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAgg             <  1:2678838/100‑1 (MQ=11)                                                           ttCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGt            >  2:1705627/1‑100 (MQ=33)                                                           ttCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGt            >  2:3475215/1‑100 (MQ=33)                                                            tCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGtt           >  1:236677/1‑100 (MQ=32)                                                              aaGGTCGGCTCCATGCAGACTGTCGTTCACATGACTAGGCCTCCAACC‑AAATCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCa         <  1:1829506/100‑1 (MQ=11)                                                              aaGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCa         >  1:3231297/1‑100 (MQ=33)                                                              aaGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCa         <  2:1833251/100‑1 (MQ=33)                                                               aGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCAc        >  1:949301/1‑100 (MQ=33)                                                                ggTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCACg       >  1:2110576/1‑100 (MQ=32)                                                                 gTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCGATGTTCAGTGTCAAGCTATAGTAAAGGTTCACgg      >  1:1864470/1‑100 (MQ=18)                                                                   cGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCACgggg    <  2:376814/100‑1 (MQ=33)                                                                    ggCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCACGGGGt   <  2:2203564/100‑1 (MQ=33)                                                                     gCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCACGGGGTc  >  1:1564559/1‑100 (MQ=33)                                                                     gCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCACGGGGTc  <  1:1444713/100‑1 (MQ=32)                                                                     |                                                                                                     CTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTCACGGGGTC  >  NC_000913/3424556‑3424723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑