| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,971 | 0 | C | A | 37.9% | 409.5 / 316.6 | 264 | intergenic (‑181/+127) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (72/92); new base A (87/13); total (159/105) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.35e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.86e-01 | |||||||||||
Only 100 of 277 total aligned reads displayed.
AGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCT > NC_000913/3705872‑3706070 | tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt < 1:549120/100‑1 (MQ=255) aGTATTGCTGGCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAc < 1:847356/100‑1 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 1:1482907/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:3010286/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:2197720/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:1721599/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCgg < 2:1545906/100‑1 (MQ=37) ggATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:886869/100‑1 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:324655/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:3674621/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:306446/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:1670167/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:3380800/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 1:829657/1‑100 (MQ=255) cGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:960325/100‑1 (MQ=255) cGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:2353725/100‑1 (MQ=255) cGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 1:431454/1‑100 (MQ=255) cGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 1:1864015/1‑100 (MQ=255) cGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:1017670/1‑100 (MQ=255) cGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:74745/100‑1 (MQ=255) gCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:2405646/100‑1 (MQ=255) agagGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaa < 1:2851927/100‑1 (MQ=255) tgcgtgcaGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaaa > 1:1053604/7‑100 (MQ=255) cgtgcaGCGCCATACGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAt > 2:2403165/5‑100 (MQ=17) cacaGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:2747808/1‑100 (MQ=255) cacaGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:467330/1‑100 (MQ=255) cacaGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:2468664/1‑100 (MQ=255) caGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:1149802/100‑1 (MQ=255) caGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:1954244/100‑1 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑Ga < 2:2264495/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACGTTGC‑‑A‑GA‑At‑t‑tt < 1:2545522/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑g < 1:1017674/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGACGGATGCGGCGTTAACGCCTTATCCGGACTAC‑AAAGTCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑g < 2:3840933/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑Gt > 2:3597139/1‑100 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAgg < 2:2897720/100‑1 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTACAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAgg > 2:2447239/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGc > 2:659254/1‑100 (MQ=255) cataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGc > 1:2617192/6‑100 (MQ=18) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGcc > 1:2056876/1‑100 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GG‑AT‑T‑TTC‑‑GTAGGCCt > 2:3735165/1‑99 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGAt < 2:1889246/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATa < 1:1209518/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGc < 1:3653156/100‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCg < 2:249966/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAgc < 2:3361887/100‑1 (MQ=255) tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAgcgc > 1:2189719/1‑100 (MQ=255) cttttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑A‑GA‑GT‑T‑CAC‑‑GTAGGCCTGATAAGCGTAgcgc > 1:3261556/10‑100 (MQ=14) gtttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAACCGCGCAAATTCAATATATTGCGGA‑GA‑AA‑A‑T‑‑‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:1128730/9‑100 (MQ=18) cttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TG‑AG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:59665/8‑100 (MQ=17) ttgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:3033894/7‑100 (MQ=18) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:2422553/100‑1 (MQ=255) tttATGCAGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 2:1937997/100‑1 (MQ=255) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAGTTCGTGCAAATTCAATAAATTGC‑‑A‑‑A‑TA‑T‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:355080/6‑100 (MQ=18) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:1476382/100‑1 (MQ=255) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:1381135/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑GA‑AA‑C‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:584944/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑A‑GG‑AC‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:2372414/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CC‑AT‑C‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:1264774/5‑100 (MQ=21) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAAAACATGCAAATTCAATAGATTGC‑‑A‑GAGAT‑T‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:1999707/5‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GG‑AG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2789865/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GG‑AG‑T‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1724317/4‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 2:2441015/100‑1 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2124592/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGC‑‑A‑AT‑CT‑T‑CTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGc > 1:2737539/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑‑‑A‑AT‑T‑CTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:218065/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TG‑AG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCAtaa > 1:1441892/3‑95 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TG‑AG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1962226/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GT‑TT‑A‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 1:3761027/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGA‑‑T‑CG‑AT‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1304816/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CC‑AT‑C‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3308462/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GG‑AG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1351576/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GG‑AG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:298374/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGC‑‑A‑GG‑AA‑A‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGc > 1:685846/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTAC‑‑AGGG‑AC‑T‑AT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 2:2729459/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GG‑AG‑T‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3414957/3‑100 (MQ=21) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:1572263/1‑100 (MQ=255) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:2714300/1‑100 (MQ=255) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:945137/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑A‑GA‑GT‑T‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:471890/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TG‑AG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3232206/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GT‑TT‑A‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 2:2658378/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGC‑‑A‑AG‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1902340/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑A‑AT‑C‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2517076/2‑100 (MQ=18) ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:1994075/2‑100 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:3505543/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:3370183/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:3632710/1‑100 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑A‑GA‑GT‑T‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:3563343/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑A‑GG‑AC‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:745626/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGC‑‑AGGG‑AC‑T‑AT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCag > 1:2640866/1‑99 (MQ=18) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:2819595/1‑100 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:3532196/1‑100 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GA‑AT‑CCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 2:1614247/1‑100 (MQ=18) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATTGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGTATTtttg < 2:2044357/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:1053600/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:1261191/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:2321858/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:429465/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:2862474/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:958040/100‑1 (MQ=255) | AGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCT > NC_000913/3705872‑3706070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |