| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,978 | 0 | A | C | 37.0% | 414.8 / inf | 341 | intergenic (‑188/+120) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base A (76/110); new base C (107/2); total (228/113) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.18e-27 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.47e-02 | |||||||||||
Only 100 of 346 total aligned reads displayed.
GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705879‑3706077 | gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa > 2:2506465/1‑100 (MQ=255)gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa < 2:3475912/100‑1 (MQ=255) aGTATTGCTGGCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAc < 1:847356/100‑1 (MQ=255) aGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAc > 1:573948/1‑100 (MQ=255) gTATTGCTGCCGGATGGCGCTGCACGCAGAGGTACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg > 1:3676795/1‑100 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 2:3124375/100‑1 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 1:1482907/100‑1 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:2197720/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:3327344/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:1721599/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 1:1721607/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCgg < 2:1545906/100‑1 (MQ=37) ggATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:886869/100‑1 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:324655/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:306446/100‑1 (MQ=255) ggCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaa < 1:1231461/100‑2 (MQ=25) gcgcTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 2:2258523/1‑99 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:711308/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTAGGCCGGATAAGGCGTTAACGCCGCATCCGGcataaac < 1:2640127/100‑7 (MQ=21) cTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaaca < 2:203392/99‑8 (MQ=25) tacACGCAGAGGCGCAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt > 1:2614554/3‑100 (MQ=255) gCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 2:2321838/1‑100 (MQ=255) gCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:2800631/1‑100 (MQ=255) cGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 1:795879/1‑100 (MQ=255) cGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:1017670/1‑100 (MQ=255) gCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:2408183/100‑1 (MQ=255) ggCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 1:1093213/1‑100 (MQ=255) cgtgcaGCGCCATACGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAt > 2:2403165/5‑100 (MQ=17) gCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:1631262/100‑1 (MQ=255) gCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc > 2:436844/1‑100 (MQ=255) cacaGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:2468664/1‑100 (MQ=255) caGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:1954244/100‑1 (MQ=255) gcgcCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc < 2:2978446/100‑1 (MQ=255) ccA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt < 1:1326881/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑t‑tt < 2:922424/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑t‑tt > 1:3019903/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑g < 1:1017674/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGACGGATGCGGCGTTAACGCCTTATCCGGACTAC‑AAAGTCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑g < 2:3840933/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑Gt > 2:3597139/1‑100 (MQ=255) tcttccgatctGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGcc < 1:1885367/90‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GG‑AT‑T‑TTC‑‑GTAGGCCt > 2:3735165/1‑99 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGAt < 2:1889246/100‑1 (MQ=255) aaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAg < 2:1430235/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGc > 2:1945300/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCg < 2:663491/99‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAgc < 2:3361887/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:3380532/1‑100 (MQ=255) ctttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑TTG‑‑GTAGGCCTGATAAgcgcagcgca > 1:2447897/9‑100 (MQ=21) tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:2838826/8‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCA‑GG‑AT‑A‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:455710/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑T‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:1072349/7‑100 (MQ=21) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 2:592573/100‑1 (MQ=255) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑A‑TA‑T‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:355080/6‑100 (MQ=18) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:1381135/100‑1 (MQ=255) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAG‑AAAAACCTGCAAATTCAATATATTGCA‑GG‑AT‑A‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2739510/4‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 2:2441015/100‑1 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1768886/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1982260/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑AT‑C‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3308462/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:3628550/3‑98 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2201857/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCA‑GG‑AA‑A‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGc > 1:685846/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTACAGGG‑AC‑T‑AT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 2:2729459/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑GA‑T‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1300363/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑T‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3414957/3‑100 (MQ=21) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:1572263/1‑100 (MQ=255) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:945137/1‑100 (MQ=255) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:2714300/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:234876/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑CCT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3677326/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3440470/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GG‑CT‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2157786/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 2:2658378/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCA‑AG‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2388329/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑A‑AT‑C‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2517076/2‑100 (MQ=18) ggcggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑A‑AT‑C‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:499341/10‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:3632710/1‑100 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:2074816/1‑99 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:3246393/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑A‑AT‑C‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:206788/9‑98 (MQ=18) ccGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑AT‑CCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 2:1614247/1‑100 (MQ=18) ggataagtcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2041409/9‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2991234/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1463948/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1993758/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2827041/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCA‑AG‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgct > 1:3879391/7‑96 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2305955/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGAT‑T‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:60819/7‑100 (MQ=17) gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatctt > 1:3516041/6‑95 (MQ=25) gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatctt > 1:474988/6‑95 (MQ=25) gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttg > 2:1181113/6‑99 (MQ=18) gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttg > 2:164637/6‑99 (MQ=18) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:2468697/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1150871/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:1261191/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:958040/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:2862474/1‑100 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 2:301342/100‑1 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:760196/1‑100 (MQ=255) | GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCA‑CCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705879‑3706077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |