| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,712,518 | (C)6→5 | 100% | intergenic (+360/‑251) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,712,513 | 0 | C | . | 95.3% | 277.8 / 7.1 | 64 | intergenic (+355/‑256) | nth/dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base . (30/31); total (32/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.08e-01 | |||||||||||
TATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCT > NC_000913/1712414‑1712606 | tatTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAc > 1:1718538/1‑100 (MQ=255) ccTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccctc < 1:162491/100‑3 (MQ=255) ctaacacaCAATACACTGTCTATTTTTCATTAAATGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATTTTCGGTAAGCCATAAcaccctt < 2:802380/92‑3 (MQ=255) tACAAAACATTACACTGGCTATTTTTTTTTTTTTTTACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccctctc > 2:1793480/1‑96 (MQ=255) tACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATGTCGCCGTTAAGCCATCAccccctctc < 1:1458161/100‑5 (MQ=255) tACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccctctc > 1:1962430/1‑96 (MQ=255) tACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccctctc < 1:1772452/100‑5 (MQ=255) aCAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTca > 1:1355826/1‑100 (MQ=255) aCAAAACATTACACTGGCTATTTATCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTca > 2:195638/1‑100 (MQ=255) cAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcag < 1:103449/100‑1 (MQ=255) aaaaCATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagt > 2:1989375/1‑100 (MQ=255) aaaCATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagtg > 2:1733493/1‑100 (MQ=255) aaaCATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagtg < 1:1844964/100‑1 (MQ=255) aaaCATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagt > 2:201586/1‑99 (MQ=255) aaaCATTACACTGGCTATTTATCAAAAACTGGACTAACTCACTAGTAAAAACGCTAAATACCAGCACATATCACCGATAAGCCATCA‑CCCCCTCTca > 2:768186/1‑97 (MQ=255) aCATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagtgca < 1:2337865/100‑1 (MQ=255) cATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTcagtgcag < 1:2103435/100‑1 (MQ=255) aTTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTcagtgcag < 1:1858552/100‑1 (MQ=255) tACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCTCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGa < 2:1559299/100‑1 (MQ=255) cacTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGaaa > 1:1930973/1‑100 (MQ=255) cacTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGaaa > 1:9237/1‑100 (MQ=255) cTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACGTAACGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGaaaaa > 2:1684702/1‑100 (MQ=255) tGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGaaaaaa < 1:1959831/100‑1 (MQ=255) ngCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAAt > 2:2317246/2‑100 (MQ=255) ggCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAAt > 2:1969901/1‑100 (MQ=255) gCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATc < 1:1939501/100‑1 (MQ=255) cTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCt > 1:37650/1‑100 (MQ=255) tATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTg < 1:782558/100‑1 (MQ=255) ttttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGcc > 2:582084/1‑99 (MQ=255) ttttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCg > 2:1335214/1‑100 (MQ=255) cAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTAc > 1:70743/1‑100 (MQ=255) aGAAACTGGATTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑TCCCCTCTCTGTGCAGTGAAAAAATCTGCCGTTACg < 2:1028608/100‑1 (MQ=255) aaCTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑ttt > 2:825656/1‑100 (MQ=255) aaCTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CACCCTCTCAGTACAGTGAAAAAATCTGCCGTTACG‑ttt > 2:948327/1‑100 (MQ=255) tGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑tttttt < 1:756991/100‑1 (MQ=255) tGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑tttttt < 1:167163/100‑1 (MQ=255) tGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑tttttt > 1:2388947/1‑100 (MQ=255) tGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑tttttt < 2:1116774/100‑1 (MQ=255) aCTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTg < 1:1277184/98‑1 (MQ=255) aCTATCTCACTAGAAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTg < 2:1341684/98‑1 (MQ=255) tATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGaaa > 2:550263/1‑100 (MQ=255) aCTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTaa < 2:242174/100‑1 (MQ=255) cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTa < 1:1373644/98‑1 (MQ=255) cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAAc > 2:5229/1‑100 (MQ=255) aaaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTTAAAAAATTTAACGTTg > 2:447635/1‑100 (MQ=255) aaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGa > 2:1031806/1‑100 (MQ=255) aaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCtag > 2:907908/1‑97 (MQ=255) cGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGTAAATTTTAACGCTGGATAAc > 2:2167346/1‑100 (MQ=255) cGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAAc < 2:1410412/100‑1 (MQ=255) cGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAAc < 1:5229/100‑1 (MQ=255) cGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAAc < 2:217516/100‑1 (MQ=255) gCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACa < 2:2190379/100‑1 (MQ=255) cTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACAt > 1:2144599/1‑100 (MQ=255) tAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACAt < 1:976932/99‑1 (MQ=255) tAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTccc > 2:1655275/1‑100 (MQ=255) aGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCg < 2:1345175/100‑1 (MQ=255) gCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCgg < 1:1684722/100‑1 (MQ=255) gCAGAACATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCgg < 1:730657/100‑1 (MQ=255) gAACATATCGACGTTAATCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAAt < 2:2020748/100‑1 (MQ=255) cATATCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGt < 1:1048322/100‑1 (MQ=255) atCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGa < 2:1967774/100‑1 (MQ=255) tCGCCGTTAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGaa > 1:2140382/1‑100 (MQ=255) gCCGTTAAGCCATCA‑CCACCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAAAGCTGGATAACATTTCCCGGAATGGTTGAAtt > 2:1520255/1‑100 (MQ=255) ttAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTcccc > 1:1550745/1‑100 (MQ=255) ttAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTcccc < 1:1031817/100‑1 (MQ=255) ttAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCAGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTTCCGGAATGGTTGAATTccc < 2:795638/99‑1 (MQ=255) tAAGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCg < 1:825665/100‑1 (MQ=255) aaGCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc > 1:246236/1‑100 (MQ=255) gCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTTTTTTTTTTTTCTCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCt > 2:1773610/1‑100 (MQ=255) gCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCTCTGAATGGTTGAATTCCCCGcc < 2:930726/99‑1 (MQ=255) gCCATCA‑CCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCACGCCt > 1:118134/1‑100 (MQ=255) | TATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACG‑TTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCT > NC_000913/1712414‑1712606 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |