| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 497,139:1 | (T)5→6 | 100% | intergenic (+145/‑36) | htpG → / → adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 497,134 | 1 | . | T | 95.5% | 215.5 / 3.3 | 66 | intergenic (+140/‑41) | htpG/adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base T (28/35); total (30/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTCATCATCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑TTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCAG > NC_000913/497035‑497228 | tttcATCATCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑c < 2:2132156/100‑1 (MQ=255) ttcATCATCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑t > 1:331976/1‑100 (MQ=255) ttcATCATCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑t < 1:297701/100‑1 (MQ=255) tcatcaTCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAACCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑tt > 2:1325622/1‑100 (MQ=255) catcatCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑ttt > 2:1442195/1‑100 (MQ=255) tcatcTGCACTTTCCGTAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTAACG‑C‑tttt < 1:1252604/99‑1 (MQ=255) tcatcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑ttttt < 1:1097588/100‑1 (MQ=255) catcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑tttttt < 2:1009239/100‑2 (MQ=255) catcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑tttttt > 2:492965/1‑99 (MQ=255) tcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑ttttttca > 2:1534603/1‑97 (MQ=255) tcTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑ttttttc < 2:493111/99‑3 (MQ=255) cTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCCATCGCCTGTTGGTGGTATCGTTTATCG‑C‑ttttttcaa > 1:1396170/1‑96 (MQ=255) cTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑ttttttcaa < 2:2280451/100‑5 (MQ=255) tGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑ttttttcaaa < 1:2230540/100‑6 (MQ=255) gCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCaaaa < 1:1140325/100‑1 (MQ=255) gCACTTTCCGCAAATTATCTCGACATTAACCGTTTCAACCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑TTTTTTcaaaa > 2:769167/1‑100 (MQ=255) attttCCGCAAATTATCTCGTCATTAAACGTTTCAGCCTCAGGTGCCTTTCTTGAGTCAATCGCCTGTTGGTGTTATCGTTTATCGAA‑TATTTCaaaa < 2:2300879/96‑1 (MQ=255) cTTTCCGCAAATTATCTCGCTATTAACCTTTTCAGCCTCATGTGCCTTTCTTGAGTCAATCGCCTGTTGGTGGTATCTTTTATCG‑CTTTTTTCaaaaaa < 2:530292/99‑1 (MQ=255) cTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCTTTTCTTGAGGCAATCGCCTGTTGGTGGTATCTTTTATCG‑CTTTTTTCAAAAAAt < 2:1127323/100‑1 (MQ=255) cTTTCCGCAAATTATCTCGACATTAACCGTTTCAGCCCAAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑ttttttttttatat > 2:342828/1‑91 (MQ=255) ttCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTc < 2:203699/100‑1 (MQ=255) tCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCg > 2:1119057/1‑100 (MQ=255) ccGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGa > 2:368932/1‑100 (MQ=255) cGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTcta > 2:321924/1‑97 (MQ=255) cGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGac < 1:1746723/100‑1 (MQ=255) cGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGac < 1:937903/100‑1 (MQ=255) gCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGac < 1:1846693/99‑1 (MQ=255) tcGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAgg > 2:1746563/1‑100 (MQ=255) tcGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAgg < 1:1624695/100‑1 (MQ=255) tcGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAgg < 2:396521/100‑1 (MQ=255) cGCCATTAACCTTTTCAGCCCCAGGTGCCGTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAggg < 1:1656906/100‑1 (MQ=255) cGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAATATTCGACACATTTTAAggg > 2:101363/1‑100 (MQ=255) gCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAgggg > 1:1298059/1‑100 (MQ=255) aTTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGGTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATATTAAGGGGAtt > 2:1746250/1‑100 (MQ=255) aaCCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTc > 2:1203075/1‑100 (MQ=255) aCCGTTTCAGCCCCAGGTGCGTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGAttttgg > 2:1456809/1‑98 (MQ=255) aCCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCg < 2:331973/100‑1 (MQ=255) cGTTTCAGCCCCAGGTGCCTTTCTTGAGTCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTgcgc < 2:51502/99‑1 (MQ=255) tCAGCCCCAGGTGGCTTTCTTGAGGCAATCGCCTGTTGCTGGTATCGTTTATCG‑CTTTTTTCAAAAAAATCGACAGATTTTAAGCGGATTTTCTCaa > 2:1474980/1‑97 (MQ=255) cAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCg < 2:1212303/100‑1 (MQ=255) cAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCg < 2:190412/100‑1 (MQ=255) cAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCg < 2:1565181/100‑1 (MQ=255) gCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTTTATAATTTTGACACATTTTAAGGGGATTTTCGCAATGCGTa > 2:1105180/1‑100 (MQ=255) ccAGGTGTCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATc < 1:890007/99‑1 (MQ=255) cAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCa < 2:1958059/99‑1 (MQ=255) aGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑TTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTc > 1:1684339/1‑100 (MQ=255) ggTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTc < 1:674942/100‑1 (MQ=255) gTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCt < 2:1796135/100‑1 (MQ=255) tGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGTGATTTTCGCAATGCGTATCATTCTg < 2:1187685/100‑1 (MQ=255) tGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTg < 2:1889269/100‑1 (MQ=255) gCCTTTGTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGc < 1:401701/100‑1 (MQ=255) cTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCt > 2:769854/1‑99 (MQ=255) tCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGgc < 1:378009/100‑1 (MQ=255) tCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGgc < 2:2119784/100‑1 (MQ=255) cTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGgc > 1:516610/1‑99 (MQ=255) tGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCt > 2:1799231/1‑100 (MQ=255) tGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCt > 2:1644490/1‑100 (MQ=255) tGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCt > 2:1486214/1‑100 (MQ=255) ggCAATCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCg > 1:1161064/1‑100 (MQ=255) aaTCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGgc < 1:640615/100‑1 (MQ=255) aTCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTTATATAATTTGAAACATTTTAAGGGGATTTTCGTAATGCGTATCATTCTGCTTGGTGCTCCGGgcg > 2:199361/1‑100 (MQ=255) aTCGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAATAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGgcg > 2:2249671/1‑100 (MQ=255) cGCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGgagc > 1:106194/1‑99 (MQ=255) gCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCgg < 1:627185/100‑1 (MQ=255) gCCTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCgg > 2:1864190/1‑100 (MQ=255) ccTGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCggg < 2:1396156/100‑1 (MQ=255) tGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGa > 2:1726197/1‑100 (MQ=255) tGTTGGTGGTATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGa > 1:589245/1‑100 (MQ=255) tggtggTATCGTTTATCG‑CTTTTTTCAAAAAATTTGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAg > 2:1377285/1‑100 (MQ=255) ggtggtATCGTTTATCG‑CTTTTTTCAAAAAATTCTACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAgg < 2:366937/100‑1 (MQ=255) gtggtATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAggg < 1:2020777/100‑1 (MQ=255) gtggtATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAgg < 2:2257192/99‑1 (MQ=255) tggtATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGa < 2:2389477/100‑1 (MQ=255) tATCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAggtcagg > 1:1189185/1‑95 (MQ=255) aTCGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACtga > 2:1452473/1‑98 (MQ=255) aTCGTTTATCG‑CTTTTTTCAAAAAAATCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCa < 1:2091781/100‑1 (MQ=255) cGTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAgg < 1:1841966/100‑1 (MQ=255) gTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGc < 1:604930/100‑1 (MQ=255) gTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGc < 2:2146391/100‑1 (MQ=255) gTTTATCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCAGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGc > 1:1680604/1‑100 (MQ=255) aTCG‑CTTTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAATGGACTCAGGCTCAg > 2:411005/1‑100 (MQ=255) | TTTCATCATCTGCACTTTCCGCAAATTATCTCGCCATTAACCGTTTCAGCCCCAGGTGCCTTTCTTGAGGCAATCGCCTGTTGGTGGTATCGTTTATCG‑C‑TTTTTCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAATGCGTATCATTCTGCTTGGCGCTCCGGGCGCGGGGAAAGGGACTCAGGCTCAG > NC_000913/497035‑497228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |