| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4132351 = | NA (NA) | 7 (0.090) | 7/162 | NT | NA | noncoding (5/34 nt) | REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4132381 = | NA (NA) | intergenic (+114/‑235) | metL/metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase | |||||
GGTAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4132456‑4132351‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatccggcAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCTTC > NC_000913/4132381‑4132478 GGTAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAA < 1:767045/100‑1GGTAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAA > 2:51529/1‑100 GTAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAAT < 2:516695/100‑1 GTAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAAT > 2:1332601/1‑100 TAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATC > 2:563332/1‑100 AAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACTCTTAATCC > 2:2158505/1‑100 AAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATC > 1:942780/1‑99 AGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCG > 2:2059330/1‑100 AAAAAGAAAATCCTGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGC < 2:1039228/100‑1 AAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGC < 1:1507134/100‑1 AAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGC > 1:1912394/1‑100 AAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGC > 1:89313/1‑100 AAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGC > 1:808203/1‑99 AAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCAGATTCGTCGTAAACGCTTAATACGGtc > 1:479323/1‑98 AGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATATACTAATTGCTTCTTGCCGGATTAGTCATAAACCCTTAATCatgcc > 2:1506395/1‑92 GCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGC > 1:1890540/1‑100 TAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGG > 1:1267586/1‑100 CTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTACGGTTTGCTTTGCATACCGGATTTT > 1:1009089/1‑100 CTTGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGCTTTTCTT > 2:130213/1‑100 TTGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTT > 1:1775621/1‑100 TGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTT > 1:238638/1‑100 GCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTT > 1:1736117/1‑100 ATCCGGCAAGTAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGGTTTTCTTTTTCTTACCATCCTGAAGTTTTTTCA < 2:1576521/100‑1 TCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCA < 1:1575258/99‑1 CCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCAT > 1:1549942/1‑99 CCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGAATACCGGATTTTCTTTTTCTTACCATACTGAAGTTTTTTCAT > 2:2137894/1‑99 CGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCT > 1:986695/1‑100 CGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCT > 2:606660/1‑100 GGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCTT > 1:1332936/1‑100 GCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATTCTGAAGTTTTTTCATTTT > 1:1668766/1‑99 GCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCTTC < 2:203808/100‑1 CAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATAGCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCTTC > 2:1533863/1‑99 GGTAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4132456‑4132351‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatccggcAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCTTC > NC_000913/4132381‑4132478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |