| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 792268 = | NA (NA) | 6 (0.080) | 3/164 | NT | NA | noncoding (5/34 nt) | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 792298 = | NA (NA) | intergenic (‑243/+18) | galE/modF | UDP‑galactose‑4‑epimerase/molybdate ABC transporter ATPase | |||||
TGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/792370‑792268‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggcAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCG > NC_000913/792298‑792395 TGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAGTATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCC < 2:73740/100‑1TGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCC > 2:1719654/1‑100TGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCC > 1:1779802/1‑100TGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCC > 1:2306048/1‑100 AGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG > 1:1962472/1‑100 GTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGC > 2:681295/1‑100 CCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCAC > 1:1499645/1‑100 CCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCAC > 1:344465/1‑100 CCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCAC > 1:1101280/1‑100 CTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGGGTCCACCGTCCGGCACG > 1:1959294/1‑100 CTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACG > 1:2352790/1‑100 TTGCCGGAGGCGGCCTTAGCACCCTCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGA > 1:1719430/1‑100 TCCGGCAAGGTCAGCACTTCCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGC < 2:1844081/99‑1 TCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACCTAGAGATAGAGTCAACCGTCCGGCACGAACTCAAGACGATGGGCAATACAGGC > 2:1909381/1‑99 TCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCA < 2:4272/100‑1 TCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCA < 1:1207130/100‑1 CCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAG > 2:642447/1‑100 CCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAG > 1:1171060/1‑100 GCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCG < 1:1318177/100‑1 GCAAGGTCAGCACTACCGACTAAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTAAAGACGATGGGTAATACAGGCAGGCG > 2:1323737/1‑100 TGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/792370‑792268‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggcAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCG > NC_000913/792298‑792395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |