New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3252144	NA (NA)	6 (0.070)	5/166	NT	NA	noncoding (80/98 nt)	RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 3252155	NA (NA)					noncoding (91/98 nt)	RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

AATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3252040‑3252144 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagatGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATGAAC  <  NC_000913/3252155‑3252059                                                                                                                                                                                                            AATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATATAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGAC                                                                                                        <  2:1307804/100‑1  ATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACC                                                                                                       <  1:426189/100‑1  ATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACC                                                                                                       >  1:834171/1‑100   TTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACC                                                                                                       <  2:2235721/99‑1    TAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAG                                                                                                     <  1:674391/100‑1    TAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAG                                                                                                     >  2:732401/1‑100         AAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCTCGCAGACCAGATcag                                                                                                >  1:935131/1‑97                    GTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATC                                                                                     <  2:963502/100‑1                          GTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCTGGTCT                                                                               <  1:1129581/100‑1                           TCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCTGGTCTG                                                                              <  1:869896/100‑1                            CGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGTTACGCTTATCTGGTCTGC                                                                             <  1:1970108/100‑1                            CGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCGGGTCTGC                                                                             <  1:1257350/100‑1                                                TATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTG                                                         <  1:1227666/100‑1                                                                                                    CCAGATGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATG     <  1:1890782/100‑1                                                                                                       GATGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATGAAC  >  1:1486302/1‑100                                                                                                                                                                                                            AATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3252040‑3252144 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagatGCGCTACGCTTATCTGGTCTGCGCGGGTTATGCAATCTATTGAATGTACAATGTTTTGTATGTCAGATAAGGCGTTCATGCCACATCCGACATGAAC  <  NC_000913/3252155‑3252059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.