New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3620569 =	NA (NA)	22 (0.270)	9/166	NT	100%	coding (1378/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	3620582 =	0 (0.000)					coding (1391/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

TCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCCTGACGGGCTGGAATTGCGCCGGGAATATGAT  >  NC_000913/3620483‑3620661                                                                                       |                                                                                              tCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATC                                                                                  >  1:692574‑M2/1‑100 (MQ=255)  cAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCG                                                                                 <  2:1821661‑M2/100‑1 (MQ=255)   aGGGCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGG                                                                                >  1:844549‑M2/1‑100 (MQ=255)    gggCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGC                                                                               <  1:1152414‑M2/100‑1 (MQ=255)    gggCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGC                                                                               <  1:2067445‑M2/100‑1 (MQ=255)     gtcacagaCGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCG                                                                              <  1:1639682‑M2/98‑1 (MQ=255)     ggCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCG                                                                              >  2:1873690‑M2/1‑100 (MQ=255)     ggCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCG                                                                              >  1:277098‑M2/1‑100 (MQ=255)      gCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGT                                                                             <  2:1894226‑M2/100‑1 (MQ=255)        acaGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCG                                                                              <  2:1618101‑M2/97‑1 (MQ=255)         caGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTAACGGGCCCCATCACGCGCATAACCACAACGGATGGCAGGGCATCGGCGatt                                                                           <  2:541560‑M2/99‑4 (MQ=255)                                                 aTGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCC                                 >  2:1631282‑M2/1‑100 (MQ=255)                                                 aTGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCC                                 >  1:919505‑M2/1‑100 (MQ=255)                                                  tgtgGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCCT                                <  2:783658‑M2/100‑1 (MQ=255)                                                   gtggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCCTG                               <  2:921641‑M2/100‑1 (MQ=255)                                                   gtggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCCTG                               <  1:956712‑M2/100‑1 (MQ=255)                                                     ggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCCTGAC                             >  1:2301959‑M2/1‑100 (MQ=255)                                                     ggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCCTGAC                             <  1:1458939‑M2/100‑1 (MQ=255)                                                      gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCCTGACG                            >  1:120362‑M2/1‑100 (MQ=255)                                                      gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCCTGACG                            <  1:1325196‑M2/100‑1 (MQ=255)                                                      gtgACGGGCCTCATCACGCGCATAACAACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGACAGCCACCAG‑TCCTGACG                            <  2:205178‑M2/100‑1 (MQ=255)                                                       tgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCCTGACG                            >  1:855394‑M2/1‑99 (MQ=255)                                                        gACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCACCCACCGG‑GCCTGcc                             <  2:1983255‑M2/97‑3 (MQ=255)                                                         aCGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGC‑CCGGTGGCTGACGtta                         >  2:2033343‑M2/1‑97 (MQ=255)                                                           gggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGT‑GGCTGACGttaac                       >  2:74831‑M2/1‑95 (MQ=255)                                                            ggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGC‑CCGGTGGCTGACGttaact                      >  1:18331‑M2/1‑94 (MQ=255)                                                             gCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGC‑CCGGTGGCTGACGttaactg                     >  1:349099‑M2/1‑93 (MQ=255)                                                              ccTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGT‑GGCTGACGttaactgg                    >  2:1639592‑M2/1‑92 (MQ=255)                                                              ccTCATCACGCGCATAAACACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGT‑GGCTGACGttaactgg                    >  1:1064790‑M2/1‑92 (MQ=255)                                                                 catcaCGCGCATAACCACGCCGGATGGCAGGGCATGGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCTCGGT‑GGCTGACGttaactgg                    >  2:343312‑M2/1‑89 (MQ=255)                                                                    caCGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcgg               <  2:1871205‑M2/100‑63 (MQ=255)                                                                      cgcgCATAACCACGCCGGATGGCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggca             <  2:429788‑M2/100‑65 (MQ=255)                                                                          cATAACCACGCCGGATGGCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccg         >  1:1871226‑M2/1‑32 (MQ=255)                                                                             aaCCACGCCGGATGGCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtct      <  2:1780521‑M2/100‑72 (MQ=255)                                                                              aCCACGCCGGATGGCAGGGCATCGGCGTggtgatgcgcgtgatgaggcccgtcaccacatccggactgtattctgttgtcctgcctgcggcatccgtct      <  2:1338262‑M2/99‑72 (MQ=255)                                                                               ccACGCCGGATGGCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgt    <  1:1775561‑M2/100‑74 (MQ=255)                                                                                cACGCCGGATGGCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtg   <  1:1962287‑M2/100‑75 (MQ=255)                                                                                cACGCCGGATGGCAGGGCATCGGCGTggtgatgcgcgtgatgaggcccgtcaccacatccggactgtattctgttgtcctgcctgcggcatccgtctgtg   <  2:1602570‑M2/100‑75 (MQ=255)                                                                                  cGCCGGATGGCAGGGCATCGGCGTggttatgcgcgtgatgaggcccgtcaccacatccgggctgtactctgttgtcctgcctgcggcatccgtctgtgc  <  2:662230‑M2/99‑76 (MQ=255)                                                                                       |                                                                                              TCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGG‑GCCTGACGGGCTGGAATTGCGCCGGGAATATGAT  >  NC_000913/3620483‑3620661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.